khmer k-mer counting library
Welcome to khmer: k-mer counting, filtering and graph traversal FTW!
The official repository is at
and you can read the docs online here:
There are two mailing lists dedicated to khmer, an announcements-only list and a discussion list. To search their archives and sign-up for them, please visit the following URLs:
- Discussion: http://lists.idyll.org/listinfo/khmer
- Announcements: http://lists.idyll.org/listinfo/khmer-announce
You can contact the current maintainers at email@example.com.
IMPORTANT NOTE: CITE US!
khmer is research software, so you should cite us when you use it in scientific publications! Please see the CITATION file for citation information.
khmer requires Python 2.7+. Linux users will need the python development libraries and gcc. OS X users may need XCode installed. For more details see doc/install.txt
pip install khmer to download, build, and install the latest stable version.
The use of a virtualenv is recommended, see http://www.virtualenv.org/en/latest/#installation
khmer is under the BSD license; see doc/LICENSE.txt. Distribution, modification and redistribution, incorporation into other software, and pretty much everything else is allowed.
khmer project contributors also edit documents collaboratively at our wiki.
Release history Release notifications
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
|Filename, size & hash SHA256 hash help||File type||Python version||Upload date|
|khmer-1.0.1-cp27-none-macosx_10_9_x86_64.whl (307.0 kB) Copy SHA256 hash SHA256||Wheel||2.7||May 9, 2014|
|khmer-1.0.1.tar.gz (19.0 MB) Copy SHA256 hash SHA256||Source||None||May 9, 2014|