Download/extract biological FASTA/Q read data and metadata

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for AroneyS from gravatar.com AroneyS Avatar for wwood from gravatar.com wwood

Unverified details

These details have not been verified by PyPI
Project links
Meta
Classifiers

Project description

Welcome

Kingfisher is a fast and flexible program for procurement of sequence files (and their annotations) from public data sources, including the European Nucleotide Archive (ENA), NCBI SRA, Amazon AWS and Google Cloud. It's input is one or more "Run" accessions e.g. DRR001970, or a BioProject accessions e.g. PRJNA621514 or SRP260223.

For more documentation, see https://wwood.github.io/kingfisher-download/

Kingfisher logo

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for AroneyS from gravatar.com AroneyS Avatar for wwood from gravatar.com wwood

Unverified details

These details have not been verified by PyPI
Project links
Meta
Classifiers

Release history Release notifications | RSS feed

This version

0.4.1

0.4.0

0.3.1

0.3.0

0.2.2

0.2.1

0.2.0

0.1.2

0.1.1

0.1.0

0.0.2

0.0.1.dev0 pre-release

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

kingfisher-0.4.1.tar.gz (41.0 kB view hashes)

Uploaded Source

Built Distribution

kingfisher-0.4.1-py3-none-any.whl (49.6 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page