kingfisher

Download/extract biological FASTA/Q read data and metadata

Project description

Welcome

Kingfisher is a fast and flexible program for procurement of sequence files (and their annotations) from public data sources, including the European Nucleotide Archive (ENA), NCBI SRA, Amazon AWS and Google Cloud. It's input is one or more "Run" accessions e.g. DRR001970, or a BioProject accessions e.g. PRJNA621514 or SRP260223.

For more documentation, see https://wwood.github.io/kingfisher-download/

Project details

Release history Release notifications | RSS feed

0.4.1

Jan 17, 2024

0.4.0

Jan 17, 2024

This version

0.3.1

Sep 27, 2023

0.3.0

Sep 20, 2023

0.2.2

Aug 8, 2023

0.2.1

May 24, 2023

0.2.0

May 23, 2023

0.1.2

Dec 19, 2022

0.1.1

Dec 19, 2022

0.1.0

Dec 2, 2022

0.0.2

Dec 2, 2022

0.0.1.dev0 pre-release

Jul 6, 2021

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

kingfisher-0.3.1.tar.gz (39.6 kB view hashes)

Uploaded Sep 27, 2023 Source

Built Distribution

kingfisher-0.3.1-py3-none-any.whl (48.7 kB view hashes)

Uploaded Sep 27, 2023 Python 3

Hashes for kingfisher-0.3.1.tar.gz

Hashes for kingfisher-0.3.1.tar.gz
Algorithm	Hash digest
SHA256	`2d2dae22f7345a5ad7ba8d64e310a9033667ca09aabdf3bea4ace05a629c388f`
MD5	`48c3ad436b1faf008a1a716b815d85a0`
BLAKE2b-256	`61db0de55b90349a2a6496debfffc88565ffa168f4d25b292df8e9f55d5410fa`

Hashes for kingfisher-0.3.1-py3-none-any.whl

Hashes for kingfisher-0.3.1-py3-none-any.whl
Algorithm	Hash digest
SHA256	`2cf15cf800fc687277995da6944dc446ab6abbc7733e91b0971de63b94d4ac21`
MD5	`96647e92162085c3ab78ebb46bd56f14`
BLAKE2b-256	`273b2904857348d062042e03a456c5f9f58584e012ad52310bdd12e95a4c6348`