kitsune 1.2.6

tools for finding an optimal kmer

1. Kitsune + Kitsune is a toolkit for evaluate the lenght of optimal k-mer in dataset.

2. Basics + Kitsune provides many methods to evaluate the amount of information by given k-mer. This quantitative measurement could be use to calculate the amount of need k-mer

3. Installation + – a. install it throught pip + …………….. $pip install kitsune …………….. __ 4. Usage + – a. Calculate k-mer from CRE, ACF, and OFC value + …………….. $kitsune cre genome_fasta/* -ks 5 -ke 10 $kitsune acf genome_fasta/* -ks 5 -ke 10 $kitsune ocf genome_fasta/* -ks 5 -ke 10 ……………..

b. calculate deistance matrix + …………….. $kitsune matrix genome_fasta/* -ks 5 -ke 10 …………….. –