Knockpy
A python implementation of the knockoffs framework for variable selection. More docs to come!
To run tests
- To run all tests, run
python3 -m pytest - To run a specific label, run
pytest -v -m {label}. - To select all labels except a particular one, run
pytest -v -m "not {label}"(with the quotes). - To run a specific file, try pytest test/{file_name}.py. To run a specific test within the file, run pytest test/{file_name}.py::classname::test_method. You also don't have to specify the exact test_method, you get the idea.
- To run a test with profiling, try
python3 -m pytest {path} --profile. This should generate a set of .prof files in prof/. Then you can run snakeviz filename.prof to visualize the output. There are also more flags/options for outputs in the command line command. - Alternatively, cprofilev is much better.
To run cprofilev, copy and paste the test to proftest/* and then run
python3 -m cprofilev proftest/test_name.py.
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