knockpy 0.1.4

Knockoffs for variable selection

Knockpy

A python implementation of the knockoffs framework for variable selection. More docs to come!

To run tests

• To run all tests, run python3 -m pytest
• To run a specific label, run pytest -v -m {label}.
• To select all labels except a particular one, run pytest -v -m "not {label}" (with the quotes).
• To run a specific file, try pytest test/{file_name}.py. To run a specific test within the file, run pytest test/{file_name}.py::classname::test_method. You also don't have to specify the exact test_method, you get the idea.
• To run a test with profiling, try python3 -m pytest {path} --profile. This should generate a set of .prof files in prof/. Then you can run snakeviz filename.prof to visualize the output. There are also more flags/options for outputs in the command line command.
• Alternatively, cprofilev is much better. To run cprofilev, copy and paste the test to proftest/* and then run python3 -m cprofilev proftest/test_name.py.