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Helper boilerplate code that is useful in Kaggle competitions.

Project description

koilerplate - boilerplate code for kaggle

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One of my great frustrations when building notebooks for kaggle is the amount of boilerplate code I always add to the top of each notebook.

The whole idea behind this package is that a simple import can pull in a lot of this boilerplate and allow me to focus on the competition in hand.


folders

The folders module defines some simple constants that can be used as the root names for the three primary folder paths used in Kaggle.

These are all defined relative to the working folder (which for a standard kaggle notebook is the /kaggle/working folder).

This module is also OS agnostic. This means that it's possible to download and use the notebook outside kaggle. If this is the case then it will define the folders relative to your local project working folder. For example:

c:\
  ├── dev                     # Somewhere you put all your project files
  .   ├── kaggle-projects     # You put all your kaggle projects here
  .   .   ├── input           # Put downloaded datasets here "INPUT_ROOT"
  .   .   ├── my-competition  # Your competition notebook in here "WORKING_ROOT"
          └── temp            # This is where temp files/folders will go "TEMP_ROOT"

Usage

from koilerplate import INPUT_ROOT, WORKING_ROOT, TEMP_ROOT

print(f"INPUT_ROOT={INPUT_ROOT}")
print(f"WORKING_ROOT={WORKING_ROOT}")
print(f"TEMP_ROOT={TEMP_ROOT}")

INPUT_ROOT=/kaggle/input
WORKING_ROOT=/kaggle/working
TEMP_ROOT=/kaggle/temp

Example kaggle notebook


zipout

The zipout folder is designed to overcome a limitation in the Kaggle working folder. There is an unspecified limit to the number of files that can be placed in the working folder, and sub-folders of the working folder.

This means that if you are manipulating a dataset it may fail silently if you place too many files in the folder, even if it is within the disk space quota defined for the notebook.

To overcome this, the recommendation through the Kaggle forum is to first write the files to a folder in /kaggle/temp and then zip up this folder and copy it to the working folder. (The temp folder does not have this same restriction.)

This module contains a single python class ZipOut that does the heavy lifting to accomplish this.

Usage

from koilerplate import ZipOut

# Create the temporary folder
my_dataset = ZipOut("my-dataset")

# Print out the path that was created
print(my_dataset.folder_path)

/kaggle/temp/my-dataset

# Make a trivial file and place it into the folder
test_file_path = os.path.join(my_dataset.folder_path, "test.txt")
with open(test_file_path, "w") as f:
    for _ in range(1, 1000):
        f.write("Hello world!\n")
# Convert the temporary folder into zip file
zip_file_path = my_dataset.make_zip_file()
print(zip_file_path)

/kaggle/working/my-dataset.zip

Example kaggle notebook


pushover

Pushover is a subscription based notification service: pushover

The service pricing is trivially inexpensive (at the time of writing a one off payment of USD 5.00 per platform; I have subscribed only for my phone).

On an internet enabled workbook you can use this to notify you of steps that are occurring during a notebook run on the Kaggle servers (or elsewhere).

To use the service you need to set up an account on pushover.net and obtain from your account settings an API token and your user id.

Usage

Create yourself a private dataset called pushover-credentials which should consist of a single file called pushover_credentials.json (note underscore in filename) which has the following structure:

{
  "token": "<<<<<--- Your token hex code string --->>>>>"
  "user": "<<<<<--- Your user hex code string --->>>>>"
}

Now, add this dataset to your competition notebook. You're now all set up to use pushover in your notebook.

# Optionally define this before importing koilerplate
NOTEBOOK_NAME = "My competition notebook"

from koilerplate import pushover

# Send a notification
pushover("Hello Kaggle World!")

Example kaggle notebook

  • #f03c15 Sorry, none yet.

offline

Often, in code competitions on Kaggle, the notebook submission has to be run without internet access. This is usually to stop notebooks handing off tasks to an external processor farm. Usually, these competitions permit the use of external datasets and libraries.

However, it is a non-trivial matter using a library that's not included in the standard notebook image. You need to build yourself a custom dataset containing all the information that's needed for pip to load them into your notebook whilst it's running without an internet connection.

The offline module is designed to take the legwork out of preparing the dataset that you will need to load the modules off-line. It contains a single function offline_pip_prepare() which will copy the modules needed into the WORKING folder so that they can be uploaded to kaggle as a dataset.

Usage

In this example we're going to prepare the libraries to be loaded as a specific verison of PyTorch plus the very good cell segmentation library cellpose. If we look at the install instructions for these libraries then we would see the recommended installion scripts for both are:

pip install torch==1.7.1+cu110 torchvision==0.8.2+cu110 torchaudio==0.7.2 \
    --find-links https://download.pytorch.org/whl/torch_stable.html

pip install cellpose==0.6.1

In order to prepare these for offline loading we have to note the module names and versions and any locations where pip should find links from. These should be each placed into a list and these passed as parameters to the offline_pip_prepare() function.

In a kaggle internet enabled notebook enter the following code cell:

from koilerplate import offline_pip_prepare

PACKAGES = [
    "torch==1.7.1+cu110",
    "torchvision==0.8.2+cu110",
    "torchaudio==0.7.2",
    "cellpose==0.6.1",
]
LINKS = [
    "https://download.pytorch.org/whl/torch_stable.html"
]

offline_pip_prepare(packages=PACKAGES, links=LINKS)

Note that this will take some time to run, as the function downloads the necessary installation information and, if necessary, builds the wheel files that pip will use.

After the cell completes the WORKING folder will contain the following:

/
└── kaggle
      ├── working                   # Working folder of your kaggle notebook
      .   ├── requirements.txt      # requirements file that you will use with pip
      .   └── wheels.zip            # the offline wheels files that pip will use

Once this is completed you need to save the notebook as a new version; Kaggle will then execute your notebook in another kernel. Wait for this to finish then navigate to the output section of the notebook and create a new dataset, call it, for example, competition-packages. Note that the above example produces a dataset of approximate size 1.2GB.

Now, start a new notebook that will become your competition entry notebook and add to it your newly created dataset. You will now see that this appears in your input folder for the notebook (note that kaggle will drop the hyphen in the dataset name):

/
└── kaggle
      ├── input                     # Kaggle loads all datasets here
      │   ├── competitionpackages   # This is your newly created dataset
      │   .   ├── requirements.txt  # requirements file that you will use with pip
      │   .   └── wheels
      │           ├── ... .whl      # the offline wheels files that pip will use
      │           └── ... .whl      
      └── working                   # Working folder of your kaggle notebook

You now need to add the following code cell somewhere near the start of your competition notebook:

!pip install \
   --requirement /kaggle/input/competitionpackages/requirements.txt \
   --no-index \
   --find-links file:///kaggle/input/competitionpackages/wheels

Note that it's very important to include the --no-index flag or this will not work when the internet access for the notebook is disabled.

Don't forget that you also need to import the libaries, as you normally would, before you use them:

import torch
import cellpose

Example kaggle notebooks/datasets


Suggestions

Please add any suggestions to the issue tracker and I'll try and get back to you.

License

This is licensed under the MIT license. See LICENSE.txt for details.

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