Installation

pip install kraken-db-builder

Usage

kdb --help

kraken-db-builder --help

To create standard Kraken2 database

kdb --db-type standard

Before creating standard database, you can try a smaller database like fungi.

kdb --db-type fungi

Why kdb(kraken-db-builder)?

kdb was aimed to created to provide a simple and easy to use tool to build wide variety of databases with a single command.

Why not kraken2-build?

kraken2-build is a tool provided by Kraken2 to build Kraken2 database. It is a great tool but it is limited to build only Kraken2 database. kdb is a more generic tool which can be used to build databases for Kraken2, Centrifuge, Bracken, etc.

Documentation

Development Status
- 4 - Beta
Intended Audience
- Developers
License
- OSI Approved :: MIT License
Operating System
- OS Independent
Programming Language
- Python
Topic
- Scientific/Engineering :: Bio-Informatics
- Utilities
Typing
- Typed

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