Skip to main content

A workflow assembler for genome analytics and informatics

Project description

kronos is a software tool for automating reproducible, auditable and distributable bioinformatics workflow development. It obviates explicit coding for workflow development to a great extent by compiling a text configuration file into an executable Python scripts.

Dependencies

Optional Python Libraries

For running on a cluster using drmaa, i.e. using -b drmaa, you will need to install:

Documentation

Please refer to kronos online documentation.

Contact

email: Jafar Taghiyar <jafar.taghiyar@gmail.com>

Please report issues in our kronos google group.

Change log

2.1.0:

  • Kronos now uses multithreading instead of multiprocessing.

2.0.4:

  • removed the limitation on the number of simultaneous jobs/pipelines.
  • added --no_prefix back to the input options of run command.
  • minor bug fixes.

2.0.3:

First version released!

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for kronos-pipeliner, version 2.1.0
Filename, size File type Python version Upload date Hashes
Filename, size kronos_pipeliner-2.1.0-py2-none-any.whl (39.3 kB) File type Wheel Python version py2 Upload date Hashes View
Filename, size kronos_pipeliner-2.1.0.tar.gz (31.9 kB) File type Source Python version None Upload date Hashes View

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring DigiCert DigiCert EV certificate Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page