ktrain 0.28.2

ktrain is a wrapper for TensorFlow Keras that makes deep learning and AI more accessible and easier to apply

Welcome to ktrain

News and Announcements

• 2021-10-13
  • ktrain v0.28.x is released and now includes the AnswerExtractor, which allows you to extract any information of interest from documents by simply phrasing it in the form of a question. A short example is shown here, but see the example notebook for more information.

# QA-Based Information Extraction

# DataFrame BEFORE
df.head()
#     Text
#0    Three major risk factors for COVID-19 were sex (male), age (≥60), and severe pneumonia.
#1    His speciality is medical risk assessments, and he is 30 years old.
#2    A total of nine studies including 356 patients were included in this study.

# AnswerExtractor will create two new columns:  'Risk Factors' and 'Sample Size'
from ktrain.text.qa import AnswerExtractor
ae = AnswerExtractor()
df = ae.extract(df.Text.values, df, [('What are the risk factors?', 'Risk Factors'),
                                     ('How many individuals in sample?', 'Sample Size')])

# DataFrame AFTER
df[['Risk Fctors', 'Sample Size']].head()
#     Risk Factors                                       Sample Size
#0    sex (male), age (≥60), and severe pneumonia        None
#1    None                                               None
#2    None                                               356

• 2021-07-20
  • ktrain v0.27.x is released and now supports causal inference using meta-learners. See the example notebook for more information.
• 2021-07-15
  • ktrain was used to train machine learning models for CoronaCentral.ai, a machine-learning-enhanced search engine for COVID publications at Stanford University. The CoronaCentral document classifier, CoronaBERT, is available on the Hugging Face model hub. CoronaCentral.ai was developed by Jake Lever and Russ Altman and funded by the Chan Zuckerberg Biohub. Check out their paper.

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Overview

ktrain is a lightweight wrapper for the deep learning library TensorFlow Keras (and other libraries) to help build, train, and deploy neural networks and other machine learning models. Inspired by ML framework extensions like fastai and ludwig, ktrain is designed to make deep learning and AI more accessible and easier to apply for both newcomers and experienced practitioners. With only a few lines of code, ktrain allows you to easily and quickly:

• employ fast, accurate, and easy-to-use pre-canned models for text, vision, graph, and tabular data:

  • text data:
    • Text Classification: BERT, DistilBERT, NBSVM, fastText, and other models _{^{[example notebook]}}
    • Text Regression: BERT, DistilBERT, Embedding-based linear text regression, fastText, and other models _{^{[example notebook]}}
    • Sequence Labeling (NER): Bidirectional LSTM with optional CRF layer and various embedding schemes such as pretrained BERT and fasttext word embeddings and character embeddings _{^{[example notebook]}}
    • Ready-to-Use NER models for English, Chinese, and Russian with no training required _{^{[example notebook]}}
    • Sentence Pair Classification for tasks like paraphrase detection _{^{[example notebook]}}
    • Unsupervised Topic Modeling with LDA _{^{[example notebook]}}
    • Document Similarity with One-Class Learning: given some documents of interest, find and score new documents that are thematically similar to them using One-Class Text Classification _{^{[example notebook]}}
    • Document Recommendation Engines and Semantic Searches: given a text snippet from a sample document, recommend documents that are semantically-related from a larger corpus _{^{[example notebook]}}
    • Text Summarization: summarize long documents with a pretrained BART model - no training required _{^{[example notebook]}}
    • End-to-End Question-Answering: ask a large text corpus questions and receive exact answers _{^{[example notebook]}}
    • Easy-to-Use Built-In Search Engine: perform keyword searches on large collections of documents _{^{[example notebook]}}
    • Zero-Shot Learning: classify documents into user-provided topics without training examples _{^{[example notebook]}}
    • Language Translation: translate text from one language to another _{^{[example notebook]}}
    • Text Extraction: Extract text from PDFs, Word documents, etc. _{^{[example notebook]}}
    • Universal Information Extraction: extract any kind of information from documents by simply phrasing it in the form of a question _{^{[example notebook]}}
  • vision data:
    • image classification (e.g., ResNet, Wide ResNet, Inception) _{^{[example notebook]}}
    • image regression for predicting numerical targets from photos (e.g., age prediction) _{^{[example notebook]}}
  • graph data:
    • node classification with graph neural networks (GraphSAGE) _{^{[example notebook]}}
    • link prediction with graph neural networks (GraphSAGE) _{^{[example notebook]}}
  • tabular data:
    • tabular classification (e.g., Titanic survival prediction) _{^{[example notebook]}}
    • tabular regression (e.g., predicting house prices) _{^{[example notebook]}}
    • causal inference using meta-learners _{^{[example notebook]}}

• estimate an optimal learning rate for your model given your data using a Learning Rate Finder

• utilize learning rate schedules such as the triangular policy, the 1cycle policy, and SGDR to effectively minimize loss and improve generalization

• build text classifiers for any language (e.g., Arabic Sentiment Analysis with BERT, Chinese Sentiment Analysis with NBSVM)

• easily train NER models for any language (e.g., Dutch NER )

• load and preprocess text and image data from a variety of formats

• inspect data points that were misclassified and provide explanations to help improve your model

• leverage a simple prediction API for saving and deploying both models and data-preprocessing steps to make predictions on new raw data

• built-in support for exporting models to ONNX and TensorFlow Lite (see example notebook for more information)

Tutorials

Please see the following tutorial notebooks for a guide on how to use ktrain on your projects:

• Tutorial 1: Introduction
• Tutorial 2: Tuning Learning Rates
• Tutorial 3: Image Classification
• Tutorial 4: Text Classification
• Tutorial 5: Learning from Unlabeled Text Data
• Tutorial 6: Text Sequence Tagging for Named Entity Recognition
• Tutorial 7: Graph Node Classification with Graph Neural Networks
• Tutorial 8: Tabular Classification and Regression
• Tutorial A1: Additional tricks, which covers topics such as previewing data augmentation schemes, inspecting intermediate output of Keras models for debugging, setting global weight decay, and use of built-in and custom callbacks.
• Tutorial A2: Explaining Predictions and Misclassifications
• Tutorial A3: Text Classification with Hugging Face Transformers
• Tutorial A4: Using Custom Data Formats and Models: Text Regression with Extra Regressors

Some blog tutorials about ktrain are shown below:

ktrain: A Lightweight Wrapper for Keras to Help Train Neural Networks

BERT Text Classification in 3 Lines of Code

Text Classification with Hugging Face Transformers in TensorFlow 2 (Without Tears)

Build an Open-Domain Question-Answering System With BERT in 3 Lines of Code

Finetuning BERT using ktrain for Disaster Tweets Classification by Hamiz Ahmed

Examples

Tasks such as text classification and image classification can be accomplished easily with only a few lines of code.

Example: Text Classification of IMDb Movie Reviews Using BERT _{^{[see notebook]}}

import ktrain
from ktrain import text as txt

# load data
(x_train, y_train), (x_test, y_test), preproc = txt.texts_from_folder('data/aclImdb', maxlen=500, 
                                                                     preprocess_mode='bert',
                                                                     train_test_names=['train', 'test'],
                                                                     classes=['pos', 'neg'])

# load model
model = txt.text_classifier('bert', (x_train, y_train), preproc=preproc)

# wrap model and data in ktrain.Learner object
learner = ktrain.get_learner(model, 
                             train_data=(x_train, y_train), 
                             val_data=(x_test, y_test), 
                             batch_size=6)

# find good learning rate
learner.lr_find()             # briefly simulate training to find good learning rate
learner.lr_plot()             # visually identify best learning rate

# train using 1cycle learning rate schedule for 3 epochs
learner.fit_onecycle(2e-5, 3) 

Example: Classifying Images of Dogs and Cats Using a Pretrained ResNet50 model _{^{[see notebook]}}

import ktrain
from ktrain import vision as vis

# load data
(train_data, val_data, preproc) = vis.images_from_folder(
                                              datadir='data/dogscats',
                                              data_aug = vis.get_data_aug(horizontal_flip=True),
                                              train_test_names=['train', 'valid'], 
                                              target_size=(224,224), color_mode='rgb')

# load model
model = vis.image_classifier('pretrained_resnet50', train_data, val_data, freeze_layers=80)

# wrap model and data in ktrain.Learner object
learner = ktrain.get_learner(model=model, train_data=train_data, val_data=val_data, 
                             workers=8, use_multiprocessing=False, batch_size=64)

# find good learning rate
learner.lr_find()             # briefly simulate training to find good learning rate
learner.lr_plot()             # visually identify best learning rate

# train using triangular policy with ModelCheckpoint and implicit ReduceLROnPlateau and EarlyStopping
learner.autofit(1e-4, checkpoint_folder='/tmp/saved_weights') 

Example: Sequence Labeling for Named Entity Recognition using a randomly initialized Bidirectional LSTM CRF model _{^{[see notebook]}}

import ktrain
from ktrain import text as txt

# load data
(trn, val, preproc) = txt.entities_from_txt('data/ner_dataset.csv',
                                            sentence_column='Sentence #',
                                            word_column='Word',
                                            tag_column='Tag', 
                                            data_format='gmb',
                                            use_char=True) # enable character embeddings

# load model
model = txt.sequence_tagger('bilstm-crf', preproc)

# wrap model and data in ktrain.Learner object
learner = ktrain.get_learner(model, train_data=trn, val_data=val)


# conventional training for 1 epoch using a learning rate of 0.001 (Keras default for Adam optmizer)
learner.fit(1e-3, 1) 

Example: Node Classification on Cora Citation Graph using a GraphSAGE model _{^{[see notbook]}}

import ktrain
from ktrain import graph as gr

# load data with supervision ratio of 10%
(trn, val, preproc)  = gr.graph_nodes_from_csv(
                                               'cora.content', # node attributes/labels
                                               'cora.cites',   # edge list
                                               sample_size=20, 
                                               holdout_pct=None, 
                                               holdout_for_inductive=False,
                                              train_pct=0.1, sep='\t')

# load model
model=gr.graph_node_classifier('graphsage', trn)

# wrap model and data in ktrain.Learner object
learner = ktrain.get_learner(model, train_data=trn, val_data=val, batch_size=64)


# find good learning rate
learner.lr_find(max_epochs=100) # briefly simulate training to find good learning rate
learner.lr_plot()               # visually identify best learning rate

# train using triangular policy with ModelCheckpoint and implicit ReduceLROnPlateau and EarlyStopping
learner.autofit(0.01, checkpoint_folder='/tmp/saved_weights')

Example: Text Classification with Hugging Face Transformers on 20 Newsgroups Dataset Using DistilBERT _{^{[see notebook]}}

# load text data
categories = ['alt.atheism', 'soc.religion.christian','comp.graphics', 'sci.med']
from sklearn.datasets import fetch_20newsgroups
train_b = fetch_20newsgroups(subset='train', categories=categories, shuffle=True)
test_b = fetch_20newsgroups(subset='test',categories=categories, shuffle=True)
(x_train, y_train) = (train_b.data, train_b.target)
(x_test, y_test) = (test_b.data, test_b.target)

# build, train, and validate model (Transformer is wrapper around transformers library)
import ktrain
from ktrain import text
MODEL_NAME = 'distilbert-base-uncased'
t = text.Transformer(MODEL_NAME, maxlen=500, class_names=train_b.target_names)
trn = t.preprocess_train(x_train, y_train)
val = t.preprocess_test(x_test, y_test)
model = t.get_classifier()
learner = ktrain.get_learner(model, train_data=trn, val_data=val, batch_size=6)
learner.fit_onecycle(5e-5, 4)
learner.validate(class_names=t.get_classes()) # class_names must be string values

# Output from learner.validate()
#                        precision    recall  f1-score   support
#
#           alt.atheism       0.92      0.93      0.93       319
#         comp.graphics       0.97      0.97      0.97       389
#               sci.med       0.97      0.95      0.96       396
#soc.religion.christian       0.96      0.96      0.96       398
#
#              accuracy                           0.96      1502
#             macro avg       0.95      0.96      0.95      1502
#          weighted avg       0.96      0.96      0.96      1502

Example: Tabular Classification for Titanic Survival Prediction Using an MLP _{^{[see notebook]}}

import ktrain
from ktrain import tabular
import pandas as pd
train_df = pd.read_csv('train.csv', index_col=0)
train_df = train_df.drop(['Name', 'Ticket', 'Cabin'], 1)
trn, val, preproc = tabular.tabular_from_df(train_df, label_columns=['Survived'], random_state=42)
learner = ktrain.get_learner(tabular.tabular_classifier('mlp', trn), train_data=trn, val_data=val)
learner.lr_find(show_plot=True, max_epochs=5) # estimate learning rate
learner.fit_onecycle(5e-3, 10)

# evaluate held-out labeled test set
tst = preproc.preprocess_test(pd.read_csv('heldout.csv', index_col=0))
learner.evaluate(tst, class_names=preproc.get_classes())

Using ktrain on Google Colab? See these Colab examples:

• a simple demo of Multiclass Text Classification with BERT
• a simple demo of Multiclass Text Classification with Hugging Face Transformers
• image classification with Cats vs. Dogs

Additional examples can be found here.

Installation

1. Make sure pip is up-to-date with: pip install -U pip

2. Install TensorFlow 2 if it is not already installed (e.g., pip install tensorflow)

3. Install ktrain: pip install ktrain

The above should be all you need on Linux systems and cloud computing environments like Google Colab and AWS EC2. If you are using ktrain on a Windows computer, you can follow these more detailed instructions that include some extra steps.

Some important things to note about installation:

Some optional, extra libraries required for some operations can be installed as needed:

# for ktrain.text.TextPredictor.explain and ktrain.vision.ImagePredictor.explain
pip install https://github.com/amaiya/eli5/archive/refs/heads/tfkeras_0_10_1.zip
# for ktrain.graph
pip install https://github.com/amaiya/stellargraph/archive/refs/heads/no_tf_dep_082.zip
# for ktrain.text.ZeroShotClassifier, ktrain.text.TransformerSummarizer, ktrain.text.Translator
pip install torch
# for ktrain.tabular.TabularPredictor.explain
pip install shap
# for ktrain.tabular.causal_inference_model
pip install causalnlp
# for ktrain.text.TextExtractor
pip install textract
# for ktrain.text.qa.AnswerExtractor.finetune
pip install datasets

Notice that ktrain is using forked versions of the eli5 and stellargraph libraries above in order to support TensorFlow2.

This code was tested on Ubuntu 18.04 LTS using TensorFlow 2.3.1 and Python 3.6.9.

How to Cite

Please cite the following paper when using ktrain:

@article{maiya2020ktrain,
    title={ktrain: A Low-Code Library for Augmented Machine Learning},
    author={Arun S. Maiya},
    year={2020},
    eprint={2004.10703},
    archivePrefix={arXiv},
    primaryClass={cs.LG},
    journal={arXiv preprint arXiv:2004.10703},
}

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Creator: Arun S. Maiya

Email: arun [at] maiya [dot] net