kunefe 0.5.1

A Python package to run containers on HPC systems

Kunefe

Kunefe is a Python package that helps users run Docker containers on HPC systems. It can:

• convert an existing Docker image into an Apptainer image
• generate scripts for batch jobs to run containerized images
• submit jobs to HPC batch queues (SLURM)
• connect to a remote host via SSH and run commands
• copy and retrieve files from a remote system
• monitor the job queue

Requirements

The host system requirements (e.g. your laptop or desktop computer):

• Docker
• Apptainer
• Python 3

Remote system requirements:

• Apptainer
• SSH server
• Slurm Workload Manager

Note: If Apptainer is not available on the remote system, it can be installed using kunefe which will require the following packages to be installed on the remote system: curl rpm2cpio cpio

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Installation

To install the latest kunefe release from PyPI, run:

python -m pip install kunefe

To install the development version of kunefe from GitHub repository, do:

python -m pip install git+https://github.com/mess-nlesc/kunefe.git@main

Examples

See the examples in examples folder.

Documentation

See https://readthedocs.org/projects/kunefe/ for the code documentation.

The project setup

The project setup is documented in project_setup.md. Feel free to remove this document (and/or the link to this document) if you don't need it.

Contributing

If you want to contribute to the development of kunefe, have a look at the contribution guidelines.

Credits

This package was created with Cookiecutter and the NLeSC/python-template.