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kyu's utils

Project description

kyutils

kyu's utils

examples

  • behavior
    • given the extracted DIO dat files from a SpikeGadgets rec file, plots the time course of the animal's decisions in the W-track task and indicates rewarded trials
    • plots place field
  • nwb
    • basic NWB conversion of ephys data
  • probe
    • probeinterface.Probe objects for the 15um and 20um versions of the Livermore polymer probes
  • spikegadgets
    • generates a trodesconf file based on a list of Livermore probe types; e.g. if implanting three Livermore probes (one 15um type and two 20um type) in alternating order, can pass the list [20, 15, 20] and will generate a trodesconf file with the contacts arranged geometrically
    • generate a trodesconf file given the number of channels; good for reconfiguring
    • parses the header of a SpikeGadgets rec file
  • spikesorting
    • plots spike waveform in probe geometry
    • computes standard metrisc for frank lab
    • generates figurl

installation

pip install kyutils

for the version that creates figurls, do pip install "kyutils[figurl]" and set up kachery-cloud.

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