A toolbox for laminar inference with MEG
Project description
Toolbox for laminar inference with MEG, powered by FreeSurfer and SPM
Operating system
Windows: Follow instructions here
Mac: May work, not tested
Linux: Tested on Ubuntu and Debian
Requirements
Python version 3.7
Anaconda (or miniconda)
Installation
Create a conda environment:
conda create -n <env name> python=3.7
replacing <env name> with the name of the environment you would like to create (i.e. ‘lameg’, or the name of your project)
Activate the environment:
conda activate <env name>
replacing <env name> with name of the environment you created.
Install FreeSurfer, following the instructions on this page
To install laMEG, run:
pip install lameg
This also installs SPM standalone and Matlab runtime, which can take some time depending on your connection speed.
Before using, deactivate and reactivate the environment for changes to environment variables to take effect:
conda deactivate conda activate <env name>
If you want to run the tutorials, download and extract the test data
Documentation and Tutorials
Once you have installed laMEG, check out the example notebooks, tutorials, and documentation.
Funding
Supported by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme grant agreement 864550, and a seed grant from the Fondation pour l’Audition.
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