lameg 0.0.1

A toolbox for laminar inference with MEG

Toolbox for laminar inference with MEG, powered by FreeSurfer and SPM

Operating system

• Windows: not supported by FreeSurfer
• Mac: may work, but not tested
• Linux: yes

Requirements

• FreeSurfer v6.0, setup and configured (FREESURFER_HOME set, SetUpFreeSurfer.sh sourced, and SUBJECTS_DIR set)
• Python version 3.7
• Anaconda (or miniconda)

Installation

1. Create a conda environment:

   conda create -n <env name> python=3.7
   

   replacing <env name> with the name of the environment you would like to create (i.e. 'lameg')

2. Activate the environment:

   conda activate <env name>
   

   replacing <env name> with name of the environment you created.

3. To install laMEG, run:

   pip install lameg
   

4. Before using, deactivate and reactivate the environment for changes to environment variables to take effect:

   conda deactivate
   conda activate <env name>
   

Funding

Supported by the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme grant agreement 864550, and a seed grant from the Fondation pour l'Audition.