lameg 0.0.2

A toolbox for laminar inference with MEG

Toolbox for laminar inference with MEG, powered by FreeSurfer and SPM

Operating system

• Windows: not supported by FreeSurfer
• Mac: may work, but not tested
• Linux: yes

Requirements

• FreeSurfer v6.0, setup and configured (FREESURFER_HOME set, SetUpFreeSurfer.sh sourced, and SUBJECTS_DIR set)
• Python version 3.7
• Anaconda (or miniconda)

Installation

1. Create a conda environment:

   conda create -n <env name> python=3.7
   

   replacing <env name> with the name of the environment you would like to create (i.e. 'lameg')

2. Activate the environment:

   conda activate <env name>
   

   replacing <env name> with name of the environment you created.

3. To install laMEG, run:

   pip install lameg
   

4. Before using, deactivate and reactivate the environment for changes to environment variables to take effect:

   conda deactivate
   conda activate <env name>
   

5. If you want to run the tutorials, download and extract the test data

Funding

Supported by the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme grant agreement 864550, and a seed grant from the Fondation pour l'Audition.