Skip to main content

Lapels - A remapper and annotator of in silico (pseudo) genome alignments

Project description

Lapels remaps reads aligned to the in silico genome back to the reference coordinate and annotates variants.

Two files are taken as input:
  1. a MOD file that is used to generate the in silico genome and
  2. a BAM file that contains the in silico genome alignments.

Lapels will generate a new BAM file with corrected read positions, adjusted cigar strings, and annotated tags of variants (eg. SNPs, Insertions, and Deletions).

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for lapels, version 1.0.6
Filename, size File type Python version Upload date Hashes
Filename, size lapels-1.0.6.tar.gz (22.1 kB) File type Source Python version None Upload date Hashes View

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring DigiCert DigiCert EV certificate Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page