libnano 0.2.1.0

Low-level nucleic acid sequence manipulation tools

libnano is beta

nucleic acid toolkit

Low level Python modules for working with DNA sequences

It was developed to be used as a cog in application specific libraries while avoiding bloat.<br/>

The goal is to be fast so most everthing is written in Cython or C.

Features

• fileio: genbank and fasta reader/writers, xmfa

• seqrecord: less featured replacement for Biopython SeqRecord

• seqstr: Reverse Complement and Hamming Distance finders

• seqgraph: find cliques of compatible sequences

• seqint: convert sequences less than 32 bases to binary

• seqscreen: filter sequences based on things like GC content

• seqsearch: search sequences for features like restriction sites or “submers” (kmers with 0 or more mismatches to a subsequence in the target)

Installation

If you would like to install libnano in your local Python environment you may use pip:

$ pip install libnano

or build from source from Github repo

$ python setup.py install