libsps

O(1) region count queries using sparse prefix sums

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Development Status
- 3 - Alpha
Intended Audience
- Science/Research
Operating System
Programming Language
- Python :: 3
- Python :: 3.9

Project description

libSps is a versatile C++ library designed for efficiently analyzing n-dimensional data. Specifically, it implements constant-time hyperrectangle count queries using a sparse prefix sum index. libSps is available as a header-only library for C++ as well as a Python 3 module.

The library is ideal for processing interactome data (https://en.wikipedia.org/wiki/Chromosome_conformation_capture), and is therefore used in Smoother (https://github.com/Siegel-Lab/BioSmoother).

libSps’s documentation is available at https://libsps.readthedocs.io/.

Project details

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Project links

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Development Status
- 3 - Alpha
Intended Audience
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Operating System
Programming Language
- Python :: 3
- Python :: 3.9

Release history Release notifications | RSS feed

This version

1.1.1

May 7, 2024

1.0.1

Oct 24, 2023

1.0.0

Sep 28, 2023

0.5.2

Sep 25, 2023

0.5.1

Sep 25, 2023

0.5.0

Sep 11, 2023

0.4.1

Sep 5, 2023

0.3.7

Jun 15, 2023

0.3.5

Jun 14, 2023

0.3.4 yanked

Jun 14, 2023

Reason this release was yanked:

broken

0.3.3 yanked

Jun 14, 2023

Reason this release was yanked:

broken

0.3.2 yanked

Jun 13, 2023

Reason this release was yanked:

broken

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Algorithm	Hash digest
SHA256	`9069b993d8958eac044d6deba6cef32485accdce594200c372d7e5247ba1fbe9`
MD5	`faa21b35ba91bc961d13511e850b38d0`
BLAKE2b-256	`0d85e5ecacb7edd6335b7ae249e0e46e904703b5f89b98519da4b2001bd96e55`

Hashes for libsps-1.1.1-cp39-cp39-macosx_11_0_arm64.whl

Hashes for libsps-1.1.1-cp39-cp39-macosx_11_0_arm64.whl
Algorithm	Hash digest
SHA256	`68bfe2ac5b8f339914903bbc160403d250660b85a0b983e7f077661a1b38a204`
MD5	`1e5f9b2980dead2297d44cfa6916b021`
BLAKE2b-256	`a87067358ff5fa58cabd0398cef7a054574092c980b1a6f9ad0bb896ca22b7c7`

Hashes for libsps-1.1.1-cp39-cp39-macosx_10_13_x86_64.whl

Hashes for libsps-1.1.1-cp39-cp39-macosx_10_13_x86_64.whl
Algorithm	Hash digest
SHA256	`c6f99503d205c7ef9f65d0e327678099f0a72e9270da06592d9418ac2f158de9`
MD5	`007f043b5bb97e39b777822f22742941`
BLAKE2b-256	`9c7d2803ada26f135b95e7bc4120445b37abf3a25e8cb873c572f262963099df`

Hashes for libsps-1.1.1-cp39-cp39-macosx_10_13_universal2.whl

Hashes for libsps-1.1.1-cp39-cp39-macosx_10_13_universal2.whl
Algorithm	Hash digest
SHA256	`5c2108c9ff630ada35721406f165cf52d7b561a8cab67592a48bcb500b3d4a7d`
MD5	`453e73301dbd792616f5e74935ad43e7`
BLAKE2b-256	`82768da3b951f8cbca4938e16bef3010f086c31b7e7cc8b2514665f997b22d5a`

Hashes for libsps-1.1.1-cp38-cp38-win_amd64.whl

Hashes for libsps-1.1.1-cp38-cp38-win_amd64.whl
Algorithm	Hash digest
SHA256	`bcc81d20321522f0d98831cbd6037b2d0314df06153827cc7120b145789bd945`
MD5	`06e3be4ceca8462ebd1d03dcae2639bb`
BLAKE2b-256	`87935ffc1a88731867386a0c7f4eb9e15208134958b03773645dd93b1486f873`

Hashes for libsps-1.1.1-cp38-cp38-win32.whl

Hashes for libsps-1.1.1-cp38-cp38-win32.whl
Algorithm	Hash digest
SHA256	`0b889216b34ea1f3b702b013e6a0d6b459724a2a98e54b17289cb75837005c91`
MD5	`d5b17fc21e565105a44e76801adf2d8a`
BLAKE2b-256	`8f69bcf23cdac4afe78ef9ffe7f8fbe9e1208c196a584e59ba7fe0c3f95033ca`

Hashes for libsps-1.1.1-cp38-cp38-musllinux_1_1_x86_64.whl

Hashes for libsps-1.1.1-cp38-cp38-musllinux_1_1_x86_64.whl
Algorithm	Hash digest
SHA256	`490f5b9f511cf486f6a3cbf777f7f3c9faa23376c2c717c0d8875eea9bb9c13a`
MD5	`f926d3471a469955d9e9c7cdd6288a30`
BLAKE2b-256	`4db4ae0d9647ed13b371b050dc3b57620d663d92f312f0328b589bf78e1a1394`

Hashes for libsps-1.1.1-cp38-cp38-musllinux_1_1_i686.whl

Hashes for libsps-1.1.1-cp38-cp38-musllinux_1_1_i686.whl
Algorithm	Hash digest
SHA256	`fb7a57a4b53230564daf98786f4796d367c6643aa95fca4be12ce6ebae54be7f`
MD5	`77e5b2d4bff9e552454599f67e6c79ba`
BLAKE2b-256	`557e8f8da015f252a24324b7025c64813fdcee76a02c2e7660d09825f162b8f1`

Hashes for libsps-1.1.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for libsps-1.1.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm	Hash digest
SHA256	`eb50ba425814aee11ebefac4eb43460b81ed84b8f76d2e08af8e4fc8fa46c265`
MD5	`c63c4b66e2c158225c3bf172a02d4f34`
BLAKE2b-256	`d0f9b87a478393d9900e5956642dfc99b6639103c642418e45b3b05d0eb7702f`

Hashes for libsps-1.1.1-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl

Hashes for libsps-1.1.1-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl
Algorithm	Hash digest
SHA256	`80ba23f283d428d356167ba4799b6c259de36f2528df59ebe17a432796e1fd63`
MD5	`de72b25edf6986db7ef705634e313267`
BLAKE2b-256	`61afac44444b5a3459fd36986f4647c5f756a7bf39f97445211ee99ba553d78b`

Hashes for libsps-1.1.1-cp38-cp38-macosx_11_0_arm64.whl

Hashes for libsps-1.1.1-cp38-cp38-macosx_11_0_arm64.whl
Algorithm	Hash digest
SHA256	`e51b12bf60073a9ce45d5b77f306e83e95bece169fa55d791ebae46889ec5bfd`
MD5	`9b8b9005e638a64e7555faf926c8b6f5`
BLAKE2b-256	`2953b50990a4470e5ab2da4762001edaab723fac564718d6c44cf83180b886dd`

Hashes for libsps-1.1.1-cp38-cp38-macosx_10_13_x86_64.whl

Hashes for libsps-1.1.1-cp38-cp38-macosx_10_13_x86_64.whl
Algorithm	Hash digest
SHA256	`7e6cc998ff0daa58424d3138f1f4936ef9b13ed36644e942d187ead5c8a422e7`
MD5	`bbeda6c3f282990e3ea5a57ca8fd18e8`
BLAKE2b-256	`f3f8b67fa604069c337a7b65e6cd82b4b82a5e7e0f9f1195ca477b3ba1bcf562`

Hashes for libsps-1.1.1-cp38-cp38-macosx_10_13_universal2.whl

Hashes for libsps-1.1.1-cp38-cp38-macosx_10_13_universal2.whl
Algorithm	Hash digest
SHA256	`59698b6193cf2081254b0368c6241d4800a6acf27ac9d83a6f2d4839c1dc5a3a`
MD5	`57d0141ec90a3fd24beaabf9d59c6ae7`
BLAKE2b-256	`0276cee58c777d798109f134ba1b98cc98364c3af7d9cb905869346166d6ec25`

Hashes for libsps-1.1.1-cp37-cp37m-win_amd64.whl

Hashes for libsps-1.1.1-cp37-cp37m-win_amd64.whl
Algorithm	Hash digest
SHA256	`d2c6912965ceb6e62c4a10911be28601b8115162525357eecf2c350ab12dc377`
MD5	`977658b3efdb9407be1b1fdd4962f24f`
BLAKE2b-256	`5e6086f5c871020c4178a37c8c6aa0adc60ac2ac15507efd3d0db5c3780c4c76`

Hashes for libsps-1.1.1-cp37-cp37m-win32.whl

Hashes for libsps-1.1.1-cp37-cp37m-win32.whl
Algorithm	Hash digest
SHA256	`cfd019afd4937daee8369e6d3ec5df68f5370564e78fcd87993b9f5a81384c98`
MD5	`2140f9842c0dfc806cc43903d8405ba7`
BLAKE2b-256	`80198f6094b2a0346a8ec7fca6b7bc264527ba4fc75f5a482d8762aec7154fb4`

Hashes for libsps-1.1.1-cp37-cp37m-musllinux_1_1_x86_64.whl

Hashes for libsps-1.1.1-cp37-cp37m-musllinux_1_1_x86_64.whl
Algorithm	Hash digest
SHA256	`df5a871b9d6910d7d0ca34fbfc5cbd262afa69821a76c501956a57b7383e3cca`
MD5	`6829ec1ee140b6b54c64d8abb14b04c8`
BLAKE2b-256	`23d7dd2f061954655daa3382884471e60c293d779a4437aa96cd37fd971ec3e5`

Hashes for libsps-1.1.1-cp37-cp37m-musllinux_1_1_i686.whl

Hashes for libsps-1.1.1-cp37-cp37m-musllinux_1_1_i686.whl
Algorithm	Hash digest
SHA256	`95c94ade5def50bd0858a82c25feb6953689bd352e31bb450139581296ec8fda`
MD5	`5cbb23ebd6467db51c3ff932ccfdd876`
BLAKE2b-256	`fee4b9f22fe92535c8415494decb22e67ee2fb9250137bb9c2b7a0dfe780dac4`

Hashes for libsps-1.1.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for libsps-1.1.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm	Hash digest
SHA256	`019f9b3e2e386bdaafce0d75b7bac1f449d885095e939e2c22fe464d37db3f06`
MD5	`b41c79b29a89a33864f3320572b826da`
BLAKE2b-256	`64bea75f393ab3bb3ab774485e4d87d69664990fe0627ae270721e575aa9b440`

Hashes for libsps-1.1.1-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl

Hashes for libsps-1.1.1-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl
Algorithm	Hash digest
SHA256	`1563777bca732dc17a0d9f9dbba2d81e64db655675745971de193a3f1f35d94f`
MD5	`df14abc5a255c185fe011891cefd58b3`
BLAKE2b-256	`504ea66e534c411e85a2e40bc92a23bc07e68671bbfdc49aa339dacbceda70c8`

Hashes for libsps-1.1.1-cp37-cp37m-macosx_10_13_x86_64.whl

Hashes for libsps-1.1.1-cp37-cp37m-macosx_10_13_x86_64.whl
Algorithm	Hash digest
SHA256	`9fdaa8e9e5c9bc6af0812fe5d5ac9b817fdc18894964362825f1b4f7e3883df5`
MD5	`292e81e7868e86ee759e6c7d561d6c36`
BLAKE2b-256	`8341699e7c46d9072d6697d02dcdaec63bc8fee1251c15162ff5029383c8d220`