A flexible and fast mixed model toolbox written in C++/python
What is Limix?
Limix is a flexible and efficient linear mixed model library with interfaces to Python and other scripting languages.
Recommended is an installation via pypi.
pip install limix will work on most systems.
If you want to install LIMIX from source you require: Python: - socns, scipy, numpy
Swig: - swig 2.0 or higher
How to use LIMIX? A good starting point is our package Vignettes. These tutorials are freely available in this repository: https://github.com/PMBio/limix-tutorials.
The main package vignette can also be viewed using the ipython notebook viewer: http://nbviewer.ipython.org/github/pmbio/limix-tutorials/blob/master/demo_yeast.ipynb