Skip to main content

A flexible and fast mixed model toolbox written in C++/python

Project description

# LIMIX

## What is Limix?

Limix is a flexible and efficient linear mixed model library with interfaces to Python and other scripting languages.

By Christoph Lippert (lippert@microsoft.com),
Franceso Paolo Casale (casale@ebi.ac.uk), and Oliver Stegle (stegle@ebi.ac.uk)


## Philosophy

Genomic analyses require flexible models that can be adapted to the needs of the user.
LIMIX is smart about how particular models are fit to safe computational cost.


## Installation:

* Recommended is an installation via pypi.
* pip install limix will work on most systems.

* If you want to install LIMIX from source you require:
Python:
- scons, scipy, numpy

* Swig:
- swig 2.0 or higher

## How to use LIMIX?
A good starting point is our package Vignettes. These tutorials can are available in this repository: https://github.com/PMBio/limix-tutorials.

The main package vignette can also be viewed using the ipython notebook viewer:
http://nbviewer.ipython.org/github/pmbio/limix-tutorials/blob/master/tutorial_yeast.ipynb or by downloading the PDF equivalent: https://github.com/PMBio/limix-tutorials/blob/master/tutorial_yeast.pdf.

More extensive documentation will be available soon.

## License
See [LICENSE] https://github.com/PMBio/limix/blob/master/license.txt

Project details


Release history Release notifications

History Node

1.0.17

History Node

1.0.16

History Node

1.0.15

History Node

1.0.14

History Node

1.0.13

History Node

1.0.12

History Node

1.0.11

History Node

1.0.10

History Node

1.0.9

History Node

1.0.7

History Node

1.0.6

History Node

1.0.5

History Node

1.0.4

History Node

1.0.3

History Node

1.0.2

History Node

1.0.1

History Node

1.0.0

History Node

0.8.6

History Node

0.8.5

History Node

0.8.4

History Node

0.8.3

History Node

0.8.2

History Node

0.8.1

History Node

0.8.0

History Node

0.7.74

History Node

0.7.73

History Node

0.7.72

History Node

0.7.71

History Node

0.7.70

History Node

0.7.69

History Node

0.7.68

History Node

0.7.67

History Node

0.7.66

History Node

0.7.65

History Node

0.7.64

History Node

0.7.63

History Node

0.7.60

History Node

0.7.59

History Node

0.7.58

History Node

0.7.57

History Node

0.7.56

History Node

0.7.53

History Node

0.7.52

History Node

0.7.51

History Node

0.7.50

History Node

0.7.49

History Node

0.7.47

History Node

0.7.46

History Node

0.7.20

History Node

0.7.18

History Node

0.7.12

History Node

0.7.11

History Node

0.7.9

History Node

0.7.8

History Node

0.7.7

History Node

0.7.5

History Node

0.7.4

History Node

0.7.3

History Node

0.7.2

History Node

0.7.1

History Node

0.7.0

History Node

0.6.6

History Node

0.6.5

History Node

0.6.4

History Node

0.6.3

History Node

0.6.2

History Node

0.6.1

History Node

0.6.0

History Node

0.5.8

History Node

0.5.7

History Node

0.5.6

History Node

0.5.5

This version
History Node

0.5.4

History Node

0.5.3

History Node

0.5.2

History Node

0.5.1

History Node

0.5

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Filename, size & hash SHA256 hash help File type Python version Upload date
limix-0.5.4.tar.gz (5.0 MB) Copy SHA256 hash SHA256 Source None May 12, 2014

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging CloudAMQP CloudAMQP RabbitMQ AWS AWS Cloud computing Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page