Skip to main content

A statistical tool to quantify isoform-specific expression using long-read RNA-seq

Project description

Long-read Isoform Quantification and Analysis

A statistical tool to quantify isoform-specific expression using long-read RNA-seq

Computational pipeline of LIQA

Inputs of LIQA

The input of LIQA is long-read RNA-seq read data in BAM format together with a refrence isoform annotation file.

Installation

Please refer to Installation for how to install LIQA.

Usage

Please refere to Usage for how to use LIQA.

Contact

If you have any questions/issues/bugs, please post them on GitHub. They would also be helpful to other users.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

liqa-1.1.6.tar.gz (9.0 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

liqa-1.1.6-py3-none-any.whl (10.6 kB view details)

Uploaded Python 3

File details

Details for the file liqa-1.1.6.tar.gz.

File metadata

  • Download URL: liqa-1.1.6.tar.gz
  • Upload date:
  • Size: 9.0 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.3.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.8.0 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.7.3

File hashes

Hashes for liqa-1.1.6.tar.gz
Algorithm Hash digest
SHA256 7d0101da9fe0843d41a586274861458277ceec71c104adcd82e15a6df447a8a8
MD5 ac280326924b689484b9308e4f945ae9
BLAKE2b-256 d7748ceea7f26952362afd1c16fa36a1db0827fba041a6636f849c66decec130

See more details on using hashes here.

File details

Details for the file liqa-1.1.6-py3-none-any.whl.

File metadata

  • Download URL: liqa-1.1.6-py3-none-any.whl
  • Upload date:
  • Size: 10.6 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.3.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.8.0 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.7.3

File hashes

Hashes for liqa-1.1.6-py3-none-any.whl
Algorithm Hash digest
SHA256 b582266f555e2799c07afe3d9f0e32d215dc881c0d1ac822e0f96678e78f9d5f
MD5 036b215c354b9bc4bbc6f261ed566f95
BLAKE2b-256 ff97e18a05fe2b5a42aab8bec71dc769828fb93d3a5dda9e6d25c85d36a330a8

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page