A python library developed to allow programmatic control of the Hudson Robotics systems installed in Argonne National Laboratory's Secure BIO Lab.
Project description
liquidhandling
This repository contains the source code for a python library developed to allow programmatic control of the Hudson Robotics systems installed in Argonne National Laboratory's Secure BIO Lab.
This library is currently in active development. As such, there are no guarantess of API stability, feature completeness, or test coverage. Any code generated by this library should be considered untested, and when run on the physical lab automation systems should be carefully monitored.
Installation
pip install liquidhandling
(For development install, see below)
Documentation
Documentation for the interfaces contained in this library can be found in the docs
directory. In addition, example code is available under example
.
Development
Installing For Development/Testing
- Install Python 3.8.5+, making sure to include pip in the install
- Git clone this repository:
git clone https://xgitlab.cels.anl.gov/rarvind/liquidhandling.git
- Run
pip install -r requirements.txt
in the repository root - Run
pip install -e .
in the repository root - Use python to run the
example/solosoft/solo_soft_example.py
and open theexample.hso
file it generates in SoloSoft to test that your setup is functioning properly.
Tests
- Run all:
python -m pytest ./test
in the repo's root directory (or with the last argument adjusted to point to thetest
directory)
Formatting the Code
To automatically format the code for style and readability, run black .
in the repo's root directory. This keeps all python code stylistically consistent.
Building and Deploying to Pypi
Make sure you have your ~/.pypirc
correctly configured with an API token from PyPi.
black .
python -m build
python -m twine upload --repository pypi dist/*
Recommended Visual Studio Code Extensions
- Better Comments by Aaron Bond
- GitLens by Eric Amodio
- Pylance by Microsoft
- Python by Microsoft
- Visual Studio IntelliCode by Microsoft
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