Skip to main content

A template project with packages

Project description

A minimalistic parser for sequence alignments (fasta or stockholm formats).

The parser returns an iterator over the alignment records as (identifier, sequence) tuples.

Usage example:

>>> import lilbio
>>> parsed_records = lilbio.parse('alignment.fa', 'fasta')

Built over modified low-level parsers from Biopython (SimpleFastaParser function and StockholmIterator class).

Changes

0.8 (2019-05-27)

  • Python3 only (>= 3.4)

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

little-bio-parser-0.8.3.tar.gz (6.8 kB view hashes)

Uploaded Source

Built Distribution

little_bio_parser-0.8.3-py3-none-any.whl (8.2 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page