live-cell tracking package including instance segmentation and tracker
Project description
livecell-tracker
Installation
Please refer to latest detectron2 documentation to install detectron2 for segmentation if you cannot build from source with the following commands. https://detectron2.readthedocs.io/en/latest/tutorials/install.html#build-detectron2-from-source
git clone https://github.com/facebookresearch/detectron2.git
python -m pip install -e detectron2
install pytorch
conda install pytorch torchvision -c pytorch
install package requirements
pip install -r requirements.txt
for (avi, mp4) movie generation
conda install -c conda-forge ffmpeg
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Source Distribution
livecell-tracker-0.0.1.tar.gz
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