localthickness 0.1.2

Fast local thickness in 3D and 2D.

localthickness

Fast local thickness in 3D and 2D.

Installation

Install the module using pip install localthickness or clone the repository.

Use

import localthickness as lt

#  Make a binary test volume. 
B = lt.create_test_volume((100, 500, 400), sigma=15, boundary=0.001)

# Compute thickness and separation.
thickness = lt.local_thickness(B, scale=0.5)
separation = lt.local_thickness(~B, scale=0.5)

# Visualize.
import matplotlib.pyplot as plt
fig, ax = plt.subplots(1, 3, figsize=(10, 5))
ax[0].imshow(B[10])
ax[1].imshow(thickness[10], cmap=lt.black_plasma())
ax[2].imshow(separation[10], cmap=lt.white_viridis())