lovis4u 0.0.3.1

Loci Visualisation Tool.

Description

LoVis4u is a bioinformatics tool for Loci Visualisation.

Supported input: Genbank, gff3 with sequence
Supported output: Static vector graphics (pdf)
Programming language: Python3
OS: MacOS, Linux
Python dependencies: biopython, bcbio-gff, scipy, configs, argparse, pandas, distinctipy, matplotlib, seaborn, reportlab
Python version: >= 3.8
OS-level dependencies: MMseqs2 (included in the package)
License: WTFPL
Version: 0.0.3 (May 2024)

Detailed documentation with user guide is available at LoVis4u Homepage

Pipeline:

Visualisation example:

Installation 🛠️

• The most stable release of lovis4u can be installed directly from pypi:

python3 -m pip install lovis4u

• The development version is available at github :

git clone https://github.com/art-egorov/lovis4u.git
cd lovis4u
python3 -m pip install --upgrade pip
python3 -m pip install setuptools wheel
python3 setup.py sdist
python3 -m pip install -e .

! If you're a linux user, run lovis4u --linux post-install command once to update paths in the premade config files that set by default for MacOS users.

Reference 📃

If you find uorf4u useful, please cite:
Artyom. A. Egorov, Gemma C. Atkinson, lovis4u: ---, ---

Contact 📇

Please contact us by e-mail artemdotegorovATmeddotludotse or use Issues to report any technical problems.
You can also use Discussions section for sharing your ideas or feature requests!

Authors 👨🏻‍💻

LoVis4u is developed by Artyom Egorov at the Atkinson Lab, Department of Experimental Medical Science, Lund University, Sweden 🇸🇪. We are open for suggestions to extend and improve LoVis4u functionality. Please don't hesitate to share your ideas or feature requests.