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Plot collection for Long Read Sequencing

Project description

longread_plots

A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.

Dependencies

pip install --user --upgrade pandas seaborn

Note that matplot lib >= 3.0.0 is needed. Python >= 3.5 is therfore recommended, otherwise plots might be corrupted.

Installation

From PyPi:

pip3 install --user lrplots

From the release tar.gz:

python3 setup.py install --user

Usage

With the pip3 installation it should be in your PATH and you should be able to just call:

lrplot example.fastq

If the command can't be found, pip3 installed it in a path that is not in your PATH variable. You can then find it with:

find ~ -name lrplot

or

find /usr/local -name lrplot

Then either add the containing directory to your PATH or just use the full path.

You can also call it like a script with python3 (or whatever your python3 is called):

python3 bin/lrplots example.fastq

Output

Project details


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Files for lrplots, version 0.6.1
Filename, size & hash File type Python version Upload date
lrplots-0.6.1-py3-none-any.whl (8.7 kB) View hashes Wheel py3
lrplots-0.6.1.tar.gz (7.6 kB) View hashes Source None

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