lts_workflows 0.2.5

SciLifeLab long-term support workflows

lts-workflows

Helper functions, utilities and Docker images for SciLifeLab long-term support (lts) workflows.

Features

This repository serves as the main entry point for lts workflows. It does not provide any workflow code /per se/, but rather the following:

• pytest wrappers for setting up tests

• base Docker image for creating workflow images

• general docs that apply to all lts workflows

For more information, see the docs.

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

History

0.2.5 (2018-04-05)

• Change to use Ubuntu as base Docker image and removed LaTeX packages

• Removed Nextflow environment

0.2.4 (2017-11-14)

• Hotfix: remove versioneer from setup_requirements (issue #24)

0.2.3 (2017-11-14)

• Add setup requirements to install tagged lts-workflows version in docker image

0.2.2 (2017-11-13)

• Add options to snakemake_run (issue #23)

0.2.1 (2017-09-26)

• Minor changes to conda/meta.yaml

• Update docs

• Update development requirements

• Add snakemake utilities

• Add inconsolata fonts to docker

• CRLF to LF and Dockerfile organization

• Make conda builds with conda build-all (issue #22)

• Fix pytest mark for slow tests (issue #19)

• Add pytest entry point (issue #18)

• Add configfile option to pytest (issue #16)

• Redirect subprocess stderr to stdout and use stdout variable (issue #17)

0.2.0 (2017-03-21)

• Add docker base image and make it smallish (issue #3)

• Update docs

0.1.1 (2017-03-01)

• Convert threads argument to string (issue #7)

• Add population layouts to helper function (issue #4)

0.1.0 (2017-02-12)

• First release on conda.