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SciLifeLab long-term support workflows

Project description


Documentation Status

Helper functions, utilities and Docker images for SciLifeLab long-term support (lts) workflows.


This repository serves as the main entry point for lts workflows. It does not provide any workflow code /per se/, but rather the following:

  • pytest wrappers for setting up tests
  • base Docker image for creating workflow images
  • general docs that apply to all lts workflows

For more information, see the docs.


This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.


0.2.5 (2018-04-05)

  • Change to use Ubuntu as base Docker image and removed LaTeX packages
  • Removed Nextflow environment

0.2.4 (2017-11-14)

  • Hotfix: remove versioneer from setup_requirements (issue #24)

0.2.3 (2017-11-14)

  • Add setup requirements to install tagged lts-workflows version in docker image

0.2.2 (2017-11-13)

  • Add options to snakemake_run (issue #23)

0.2.1 (2017-09-26)

  • Minor changes to conda/meta.yaml
  • Update docs
  • Update development requirements
  • Add snakemake utilities
  • Add inconsolata fonts to docker
  • CRLF to LF and Dockerfile organization
  • Make conda builds with conda build-all (issue #22)
  • Fix pytest mark for slow tests (issue #19)
  • Add pytest entry point (issue #18)
  • Add configfile option to pytest (issue #16)
  • Redirect subprocess stderr to stdout and use stdout variable (issue #17)

0.2.0 (2017-03-21)

  • Add docker base image and make it smallish (issue #3)
  • Update docs

0.1.1 (2017-03-01)

  • Convert threads argument to string (issue #7)
  • Add population layouts to helper function (issue #4)

0.1.0 (2017-02-12)

  • First release on conda.

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