Helper functions for luciferase data
Project description
luciferase
Tool for plotting luciferase reporter data. Thanks due to Joshua Chiou and Mei-lin Okino for inspiration and contributions.
Installation
pip3 install luciferase
or
pip3 install --user luciferase
Command-line interface for barplots
A script called luciferase-barplot
for creating bar plots from JSON-formatted
data is included. After installing luciferase
, you can use it like this:
luciferase-barplot --title "plot title" example.json example.pdf
See also the help message:
luciferase-barplot -h
Examples of luciferase reporter data in JSON format:
{
"Non-risk, Fwd": [8.354, 12.725, 8.506],
"Risk, Fwd": [5.078, 5.038, 5.661],
"Non-risk, Rev": [9.564, 9.692, 12.622],
"Risk, Rev": [10.777, 11.389, 10.598],
"Empty": [1.042, 0.92, 1.042]
}
{
"Alt, MIN6": [5.47, 7.17, 6.15],
"Ref, MIN6": [3.16, 3.04, 4.34],
"Empty, MIN6": [1.07, 0.83, 0.76],
"Alt, ALPHA-TC6": [2.50, 3.47, 3.33],
"Ref, ALPHA-TC6": [2.01, 1.96, 2.31],
"Empty, ALPHA-TC6": [1.042, 0.92, 1.042]
}
The input JSON should contain either five entries or six entries. If it contains five entries, the bars of the resulting plot will have a 2-2-1 style. If it contains six entries, the bars will have a 2-1-2-1 style.
Significance indicators will be written above the bars: ***
if p<0.001,
**
if p<0.01, *
if p<0.05, ns
otherwise.
Here is an example of a plot in the 2-1-2-1 style:
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for luciferase-1.3.0-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 0545feb2bb2d46b0dfa1bbafbf577bc7232707dcdd88fa6e55ba51239033f5c5 |
|
MD5 | 3885159aaeb282d5b135a19228ef5702 |
|
BLAKE2b-256 | ebe43f8dc942c67f360e34734acbc6edf61d3797e9f9dcee46a12ae8947996c3 |