lxzbiotools 0.3.0

Xingze Li's Bioinformatics Analysis Scripts

Introduction

lxzbiotools contains some bioinformation data processing scripts.

Obviously, it is not perfect, so it will be updated later until it is strong enough

Install

pip3 install lxzbiotools

Use

$ lxzbiotools --help

 Usage: lxzbiotools [OPTIONS] COMMAND [ARGS]...

 Xingze Li's bioinformatics analysis scripts.
 emali: [e-mail]

╭─ Options ──────────────────────────────────────────────────────────────────────────────╮
│ --install-completion        [bash|zsh|fish|powershell|p  Install completion for the    │
│                             wsh]                         specified shell.              │
│                                                          [default: None]               │
│ --show-completion           [bash|zsh|fish|powershell|p  Show completion for the       │
│                             wsh]                         specified shell, to copy it   │
│                                                          or customize the              │
│                                                          installation.                 │
│                                                          [default: None]               │
│ --help                                                   Show this message and exit.   │
╰────────────────────────────────────────────────────────────────────────────────────────╯
╭─ Commands ─────────────────────────────────────────────────────────────────────────────╮
│ cds2pep          Convert cds file to pep file                                          │
│ excel2txt        Convert excel file to txt file                                        │
│ fa2fq            Convert a fasta file to a fastq file                                  │
│ fq2fa            Convert a fastq file to a fasta file                                  │
│ gfa2fa           Convert gfa file to fasta file                                        │
│ gff                                                                                    │
│ len                                                                                    │
│ run              Parallelized running tasks                                            │
│ seq              Extract sequences by sequence name or keyword                         │
│ trans            Convert multi-line fasta to one-line fasta                            │
╰────────────────────────────────────────────────────────────────────────────────────────╯