making OTUs from genomes, and stats on them. and maybe even core-genomes
Project description
mOTUlizer
Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin
INSTALL
pip install mOTUlizer
USAGE
EASY
To make OTUs and get some stats, needs fastANI in the PATH, and output of checkm
mOTUlize.py -k checkm_output.txt --output a_messy_json-file_with_the_output.json
Loads of little options if you do : mOTUlize.py -h
Also there is mOTUpan.py that can compute core genomes and pangenomes. Needs to be more debugged so try out at own risk:
mOTUpan.py -h
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
mOTUlizer-0.1.2a0.tar.gz
(15.1 kB
view hashes)
Built Distribution
Close
Hashes for mOTUlizer-0.1.2a0-py3-none-any.whl
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 554d7cdb0bf7e9a97c0e56d18e8e1a9d7758b8d0faf4da03878cefdd4c295c2f |
|
| MD5 | ec68c5cebb8b21c11af6ce68945e8abb |
|
| BLAKE2b-256 | 1857ef4a5dd93310f2186425fd2ac2d48c369a79606e33587bedfe075646112e |
