Motif-Aware PRALINE (MA-PRALINE)
A motif-aware multiple sequence alignment tool. An article accompanying this software has been published in PLOS Computational Biology here.
Installing MA-PRALINE
Requirements
- Python 2.7 / Python 3.6 (earlier 3.x versions may also work, but have not been tested)
- An installation of PRALINE (https://github.com/ibivu/PRALINE)
Instructions
You can install MA-PRALINE by cloning this repository and running (in a shell):
python setup.py install
MA-PRALINE is also available on PyPI. You can install it with the following command:
pip install ma-praline
Extras
There is an additional repository at https://github.com/ibivu/MA-PRALINE-extras containing auxiliary code that was used to perform various analyses while developing MA-PRALINE. Although no support is provided for this code, some people may find it useful to, e.g. reparameterise MA-PRALINE or to calculate motif statistics.
1 maintainer
Metadata
1 maintainer
Release files for ma-praline 1.1.0
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
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| ma-praline-1.1.0.tar.gz | 11.2 kB | Without provenance | Details for ma-praline-1.1.0.tar.gz |
Built distributions (wheels)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| ma_praline-1.1.0-py3-none-any.whl | Python 3 | none | any | Details for ma_praline-1.1.0-py3-none-any.whl |
| ma_praline-1.1.0-py2-none-any.whl | Python 2 | none | any | Details for ma_praline-1.1.0-py2-none-any.whl |
Total release size: 50.0 kB
Release files / ma-praline-1.1.0.tar.gz
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Release files / ma_praline-1.1.0-py3-none-any.whl
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| Tags | Python 3 |
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Release files / ma_praline-1.1.0-py2-none-any.whl
| Download URL | ma_praline-1.1.0-py2-none-any.whl |
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| Size | 19.4 kB |
| Tags | Python 2 |
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