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PRALINE workflow for motif-aware alignment (MA-PRALINE).

Project description

Motif-Aware PRALINE (MA-PRALINE)

A motif-aware multiple sequence alignment tool. An article accompanying this software has been published in PLOS Computational Biology here.

Installing MA-PRALINE

Requirements

Instructions

You can install MA-PRALINE by cloning this repository and running (in a shell):

python setup.py install

MA-PRALINE is also available on PyPI. You can install it with the following command:

pip install ma-praline

Extras

There is an additional repository at https://github.com/ibivu/MA-PRALINE-extras containing auxiliary code that was used to perform various analyses while developing MA-PRALINE. Although no support is provided for this code, some people may find it useful to, e.g. reparameterise MA-PRALINE or to calculate motif statistics.

Project details


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