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Migration Analysis of Clonal History 2

Project description

MACH2

Installation

These packages are necessary to run MACH2.

    graphviz
    gurobi>=9.0.0,<10.0.0
    numpy==1.24.3
    pandas==2.0.1
    pyomo==6.5.0
    networkx==3.1

Can be installed using conda

    $ conda create -n mach2 numpy pandas pyomo networkx gurobi=9 python-graphviz jupyterlab python=3
    $ conda activate mach2

The package can be loaded to Jupyter Lab. Since setup.py is yet to set up properly, one needs to run Jupyter Notebook from package folder.

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