Migration Analysis of Clonal History 2
Project description
MACH2
Installation
These packages are necessary to run MACH2.
graphviz
gurobi>=9.0.0,<10.0.0
numpy==1.24.3
pandas==2.0.1
pyomo==6.5.0
networkx==3.1
Can be installed using conda
$ conda create -n mach2 numpy pandas pyomo networkx gurobi=9 python-graphviz jupyterlab python=3
$ conda activate mach2
The package can be loaded to Jupyter Lab. Since setup.py
is yet to set up properly, one needs to run Jupyter Notebook from package folder.
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