Skip to main content

Magnetosome gene cluster annotation, screening and mapping tool

Reason this release was yanked:

There is a bug in batch processing

Project description

magcluster

Magnetosome gene cluster annotation, screening and mapping tool

Installation

Run the following to install: pip install magcluster

General Usage

Magnetosome gene annotation:
$ magcluster maga XXX.fa

Magnetosome gene screen:
$ magcluster magsc XXX.faa XXX.gbk

Magnetosome gene cluster mapping:
$ magcluster magm XXX_screened.gbk

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

magcluster-0.1.0.tar.gz (20.5 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

magcluster-0.1.0-py3-none-any.whl (34.2 kB view details)

Uploaded Python 3

File details

Details for the file magcluster-0.1.0.tar.gz.

File metadata

  • Download URL: magcluster-0.1.0.tar.gz
  • Upload date:
  • Size: 20.5 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/4.0.1 pkginfo/1.7.0 requests/2.24.0 requests-toolbelt/0.9.1 tqdm/4.51.0 CPython/3.8.5

File hashes

Hashes for magcluster-0.1.0.tar.gz
Algorithm Hash digest
SHA256 9bf6ae046ae27406c2a86fc0e907bbd217c5eee0310cbaa156e292d7131cb57c
MD5 e8a579decb0829a6a8e2963fa7a71ab4
BLAKE2b-256 c58df1f7e337b0f8a5792f4affb2954bcddb6885f00972e1c85d4275f81e1f67

See more details on using hashes here.

File details

Details for the file magcluster-0.1.0-py3-none-any.whl.

File metadata

  • Download URL: magcluster-0.1.0-py3-none-any.whl
  • Upload date:
  • Size: 34.2 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/4.0.1 pkginfo/1.7.0 requests/2.24.0 requests-toolbelt/0.9.1 tqdm/4.51.0 CPython/3.8.5

File hashes

Hashes for magcluster-0.1.0-py3-none-any.whl
Algorithm Hash digest
SHA256 2d9439ad66aca8ec0855786cedd4f1be4cd1e2b912058770fb0d3add03675e32
MD5 04dd9a424fc2d707edd1b8e1df4fa4bb
BLAKE2b-256 08f3ef976a8c6faa813b0318f37580d875e9390447afc7c5a0001e754a4f3a05

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page