manim-ml 0.0.23

Machine Learning Animations in python using Manim.

ManimML

ManimML is a project focused on providing animations and visualizations of common machine learning concepts with the Manim Community Library. We want this project to be a compilation of primitive visualizations that can be easily combined to create videos about complex machine learning concepts. Additionally, we want to provide a set of abstractions which allow users to focus on explanations instead of software engineering.

A sneak peak ...

Table of Contents

• ManimML
  • Table of Contents
  • Getting Started
    • Installation
    • First Neural Network
  • Guide
    • Setting Up a Scene
    • A Simple Feed Forward Network
    • Animating the Forward Pass
    • Convolutional Neural Networks
    • Convolutional Neural Network with an Image
    • Max Pooling
    • Activation Functions
    • More Complex Animations: Neural Network Dropout
  • Citation

Getting Started

Installation

First you will want to install manim. Make sure it is the Manim Community edition, and not the original 3Blue1Brown Manim version.

Then install the package form source or pip install manim_ml. Note: some recent features may only available if you install from source.

First Neural Network

This is a visualization of a Convolutional Neural Network. The code needed to generate this visualization is shown below.

from manim import *

from manim_ml.neural_network import Convolutional2DLayer, FeedForwardLayer, NeuralNetwork

# This changes the resolution of our rendered videos
config.pixel_height = 700
config.pixel_width = 1900
config.frame_height = 7.0
config.frame_width = 7.0

# Here we define our basic scene
class BasicScene(ThreeDScene):

    # The code for generating our scene goes here
    def construct(self):
        # Make the neural network
        nn = NeuralNetwork([
                Convolutional2DLayer(1, 7, 3, filter_spacing=0.32),
                Convolutional2DLayer(3, 5, 3, filter_spacing=0.32),
                Convolutional2DLayer(5, 3, 3, filter_spacing=0.18),
                FeedForwardLayer(3),
                FeedForwardLayer(3),
            ],
            layer_spacing=0.25,
        )
        # Center the neural network
        nn.move_to(ORIGIN)
        self.add(nn)
        # Make a forward pass animation
        forward_pass = nn.make_forward_pass_animation()
        # Play animation
        self.play(forward_pass)

You can generate the above video by copying the above code into a file called example.py and running the following in your command line (assuming everything is installed properly):

$ manim -pql example.py

The above generates a low resolution rendering, you can improve the resolution (at the cost of slowing down rendering speed) by running:

$ manim -pqh example.py

Guide

This is a more in depth guide showing how to use various features of ManimML (Note: ManimML is still under development so some features may change, and documentation is lacking).

Setting Up a Scene

In Manim all of your visualizations and animations belong inside of a Scene. You can make a scene by extending the Scene class or the ThreeDScene class if your animation has 3D content (as does our example). Add the following code to a python module called example.py.

from manim import *
# Import modules here

class BasicScene(ThreeDScene):

    def construct(self):
        # Your code goes here
        text = Text("Your first scene!")
        self.add(text)

In order to render the scene we will run the following in the command line:

$ manim -pq -l example.py

This will generate an image file in low quality (use -h for high quality).

For the rest of the tutorial the code snippets will need to be copied into the body of the construct function.

A Simple Feed Forward Network

With ManimML we can easily visualize a simple feed forward neural network.

from manim_ml.neural_network import NeuralNetwork, FeedForwardLayer

nn = NeuralNetwork([
    FeedForwardLayer(num_nodes=3),
    FeedForwardLayer(num_nodes=5),
    FeedForwardLayer(num_nodes=3)
])
self.add(nn)

In the above code we create a NeuralNetwork object and pass a list of layers to it. For each feed forward layer we specify the number of nodes. ManimML will automatically piece together the individual layers into a single neural network. We call self.add(nn) in the body of the scene's construct method in order to add the neural network to the scene.

The majority of ManimML neural network objects and functions can be imported directly from manim_ml.neural_network.

We can now render a still frame image of the scene by running:

$ manim -pql example.py

Animating the Forward Pass

We can automatically render the forward pass of a neural network by creating the animation with the neural_network.make_forward_pass_animation method and play the animation in our scene with self.play(animation).

from manim_ml.neural_network import NeuralNetwork, FeedForwardLayer
# Make the neural network
nn = NeuralNetwork([
    FeedForwardLayer(num_nodes=3),
    FeedForwardLayer(num_nodes=5),
    FeedForwardLayer(num_nodes=3)
])
self.add(nn)
# Make the animation
forward_pass_animation = nn.make_forward_pass_animation()
# Play the animation
self.play(forward_pass_animation)

We can now render with:

$ manim -pql example.py

Convolutional Neural Networks

ManimML supports visualizations of Convolutional Neural Networks. You can specify the number of feature maps, feature map size, and filter size as follows Convolutional2DLayer(num_feature_maps, feature_map_size, filter_size). There are a number of other style parameters that we can change as well(documentation coming soon).

Here is a multi-layer convolutional neural network. If you are unfamiliar with convolutional networks this overview is a great resource. You need to be careful that the feature map sizes and filter dimensions of adjacent layers match up.

from manim_ml.neural_network import NeuralNetwork, FeedForwardLayer, Convolutional2DLayer

nn = NeuralNetwork([
        Convolutional2DLayer(1, 7, 3, filter_spacing=0.32), # Note the default stride is 1. 
        Convolutional2DLayer(3, 5, 3, filter_spacing=0.32),
        Convolutional2DLayer(5, 3, 3, filter_spacing=0.18),
        FeedForwardLayer(3),
        FeedForwardLayer(3),
    ],
    layer_spacing=0.25,
)
# Center the neural network
nn.move_to(ORIGIN)
self.add(nn)
# Make a forward pass animation
forward_pass = nn.make_forward_pass_animation()

We can now render with:

$ manim -pql example.py

And there we have it, a convolutional neural network.

Convolutional Neural Network with an Image

We can also animate an image being fed into a convolutional neural network by specifiying an ImageLayer before the first convolutional layer.

import numpy as np
from PIL import Image
from manim_ml.neural_network import NeuralNetwork, FeedForwardLayer, Convolutional2DLayer, ImageLayer

image = Image.open("digit.jpeg") # You will need to download an image of a digit. 
numpy_image = np.asarray(image)

nn = NeuralNetwork([
        ImageLayer(numpy_image, height=1.5),
        Convolutional2DLayer(1, 7, 3, filter_spacing=0.32), # Note the default stride is 1. 
        Convolutional2DLayer(3, 5, 3, filter_spacing=0.32),
        Convolutional2DLayer(5, 3, 3, filter_spacing=0.18),
        FeedForwardLayer(3),
        FeedForwardLayer(3),
    ],
    layer_spacing=0.25,
)
# Center the neural network
nn.move_to(ORIGIN)
self.add(nn)
# Make a forward pass animation
forward_pass = nn.make_forward_pass_animation()

We can now render with:

$ manim -pql example.py

Max Pooling

A common operation in deep learning is the 2D Max Pooling operation, which reduces the size of convolutional feature maps. We can visualize max pooling with the MaxPooling2DLayer.

from manim_ml.neural_network import NeuralNetwork, Convolutional2DLayer, MaxPooling2DLayer
# Make neural network
nn = NeuralNetwork([
        Convolutional2DLayer(1, 8),
        Convolutional2DLayer(3, 6, 3),
        MaxPooling2DLayer(kernel_size=2),
        Convolutional2DLayer(5, 2, 2),
    ],
    layer_spacing=0.25,
)
# Center the nn
nn.move_to(ORIGIN)
self.add(nn)
# Play animation
forward_pass = nn.make_forward_pass_animation()
self.wait(1)
self.play(forward_pass)

We can now render with:

$ manim -pql example.py

Activation Functions

Activation functions apply non-linarities to the outputs of neural networks. They have different shapes, and it is useful to be able to visualize the functions. I added the ability to visualize activation functions over FeedForwardLayer and Convolutional2DLayer by passing an argument as follows:

layer = FeedForwardLayer(num_nodes=3, activation_function="ReLU")

We can add these to larger neural network as follows:

from manim_ml.neural_network import NeuralNetwork, Convolutional2DLayer, FeedForwardLayer
# Make nn
nn = NeuralNetwork([
        Convolutional2DLayer(1, 7, filter_spacing=0.32),
        Convolutional2DLayer(3, 5, 3, filter_spacing=0.32, activation_function="ReLU"),
        FeedForwardLayer(3, activation_function="Sigmoid"),
    ],
    layer_spacing=0.25,
)
self.add(nn)
# Play animation
forward_pass = nn.make_forward_pass_animation()
self.play(forward_pass)

We can now render with:

$ manim -pql example.py

More Complex Animations: Neural Network Dropout

from manim_ml.neural_network import NeuralNetwork, FeedForwardLayer
from manim_ml.neural_network.animations.dropout import make_neural_network_dropout_animation
# Make nn
nn = NeuralNetwork([
        FeedForwardLayer(3),
        FeedForwardLayer(5),
        FeedForwardLayer(3),
        FeedForwardLayer(5),
        FeedForwardLayer(4),
    ],
    layer_spacing=0.4,
)
# Center the nn
nn.move_to(ORIGIN)
self.add(nn)
# Play animation
self.play(
    make_neural_network_dropout_animation(
        nn, dropout_rate=0.25, do_forward_pass=True
    )
)
self.wait(1)

We can now render with:

$ manim -pql example.py

Seed the Dropouts:

self.play(
    make_neural_network_dropout_animation(
        nn, dropout_rate=0.25, do_forward_pass=True, seed=4
    )
)

Seed the Dropouts with First layer static:

self.play(
    make_neural_network_dropout_animation(
        nn, dropout_rate=0.25, do_forward_pass=True, seed=4,  first_layer_stable=True
    )
)

Seed the Dropouts with First and Last layers static:

self.play(
    make_neural_network_dropout_animation(
        nn, dropout_rate=0.25, do_forward_pass=True, seed=4, first_layer_stable=True, last_layer_stable=True
    )
)

Citation

If you found ManimML useful please cite it below!

@software{alec_helbling_2023_7760911,
  author       = {Alec Helbling},
  title        = {{ManimML: A Python Animation Engine for Machine 
                   Learning Architectures}},
  month        = mar,
  year         = 2023,
  publisher    = {Zenodo},
  version      = {v0.0.20},
  doi          = {10.5281/zenodo.7760911},
  url          = {https://doi.org/10.5281/zenodo.7760911}
}