Skip to main content

MANTiS is a Multivariate ANalysis Tool for x-ray Spectromicroscopy

Project description

Spectromicroscopy

Spectromicroscopy combines spectral data with microscopy, where typical datasets consist of a stack of microscopic images taken across an energy range. Due to the data complexity, manual analysis can be time consuming and inefficient, whereas multivariate analysis tools not only reduce the time needed but also can uncover hidden trends in the data.

Mantis

MANTiS is Multivariate ANalysis Tool for Spectromicroscopy developed in Python by 2nd Look Consulting. It uses principal component analysis and cluster analysis to classify pixels according to spectral similarity.

Download

Mantis package and binaries can be downloaded from spectromicroscopy.com. Alternatively, you can install Python and then run the command: python3 -m pip install mantis-xray

Update

You can upgrade to the latest package release with the command: pip3 install mantis-xray -U. It is recommended that you also upgrade the dependencies with: pip3 install mantis-xray -U --upgrade-strategy "eager"

Run

Installation via pip provides the mantis-xray command (alternatively python3 -m mantis_xray) to start the Mantis GUI.

User Guide

Mantis User Guide can be found on the project Wiki pages Home.

References

Please use the following reference when quoting Mantis

Lerotic M, Mak R, Wirick S, Meirer F, Jacobsen C. MANTiS: a program for the analysis of X-ray spectromicroscopy data. J. Synchrotron Rad. 2014 Sep; 21(5); 1206–1212 [http://dx.doi.org/10.1107/S1600577514013964]

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

mantis-xray-3.1.7.tar.gz (1.5 MB view hashes)

Uploaded source

Built Distribution

mantis_xray-3.1.7-py3-none-any.whl (1.6 MB view hashes)

Uploaded py3

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page