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A Python client library and command line interface to the Varda database for genomic variation frequencies

Project description

Warning: This is a work in progress, probably not yet ready for use!

Manwë is a Python client library for working with the Varda database for genomic variation frequencies. It also provides a command line interface to some of its functionality.

The main goal of Manwë is to offer the complete Varda API, but on an abstraction level that is nice to work with from Python code.

>>> import manwe
>>> session = manwe.Session()
>>> user = session.create_user('testlogin', 'password')
>>> user.dirty
False
>>> user.name = 'Test User'
>>> user.dirty
True
>>> user.save()
>>> user.dirty
False
>>> for sample in session.samples():
...     print sample.user.name
...
Rob Userman
Barry Robsfriend
Rob Userman

To install the latest release via PyPI using pip:

pip install manwe

Documentation

The latest documentation with user guide and API reference is hosted at Read The Docs.

You can also compile the documentation directly from the source code by running make html from the doc/ subdirectory. This requires Sphinx to be installed.

Project details


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