Shows a bar chart with benchmark results.

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Marsilea: Declarative creation of composable visualization!

Documentation

You can read the documentation on Read the Docs.

Read Documentation

Installation

Using PIP

pip install marsilea

Using Conda/Mamba

conda install -c conda-forge marsilea
# or
mamba install -c conda-forge marsilea

What is Composable Visualization?

Shows a bar chart with benchmark results.

When we do visualization, we often need to combine multiple plots to show different aspects of the data. For example, we may need to create a heatmap to show the expression of genes in different cells, and then create a bar chart to show the expression of genes in different cell types. A visualization contains multiple plots is called a composable visualization. In Marsilea, we employ a declarative approach for user to create composable visualization incrementally.

Citation

If you use Marsilea in your research, please cite the following:

Marsilea: an intuitive generalized paradigm for composable visualizations

Yimin Zheng, Zhihang Zheng, André F. Rendeiro & Edwin Cheung

Genome Biology 2025 Jan 06. DOI: 10.1186/s13059-017-1382-0

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  2. Join us on Gitter

Examples

Bar Chart With Image Stacked Bar Arc Diagram
Heatmap Oncoprint Upsetplot

Project links

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Key dates

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  • Released:
Newer release available (0.6.2)

1 maintainer

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Avatar for milk-zheng from gravatar.com milk-zheng

Credits

Author: Yimin Zheng

GitHub Statistics

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The GitHub source repository was provided by the project maintainers and verified by PyPI at the time of upload. Stars, forks, and open issues/PRs are derived from that repository and have not been independently verified.

License

MIT License (The MIT License (MIT) Copyright (c) 2025 Yimin Zheng Permission is hereby granted, free of charge,...)

Requires

Python >=3.8

Classifiers

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