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Module for selecting polygonal ROIs on images, spline fitting and ROI expansion

Project description

matplotlib-polyroi

CC BY 4.0 PyPi version Binder Black pre-commit Documentation Status

Module for selecting polygonal ROIs on images, spline fitting and ROI expansion

Instructions

As a first step, I would recommend checking out the tutorial notebook. This can be run in the cloud using Binder (please note that it may take several minutes to open the notebook):

Binder

To run locally, download the code and install the relevant requirements (requirements.txt) in a virtual environment.

Installation

To explore further and incorporate into your own analysis pipelines, you can install the package from PyPI using pip:

pip install matplotlib-polyroi

If you want to make changes to the code you can download/clone this folder, navigate to it, and run:

pip install -e .[dev]

License

This work is licensed under a Creative Commons Attribution 4.0 International License.

CC BY 4.0

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