mbapy 0.6.1

MyBA in Python

BA_PY

mbapy is a Python package that includes a collection of useful Python scripts as sub-modules, and it's goal is Basic for All in Python.
mbapy primarily focus on areas such as sci-plot, stats, web-crawler, sci-paper utilities, and deep learning with pytorch.

get start

install

Now, mbapy only support pypi install:

pip install mbapy

mbapy is a multi-funtional package, and it does not require every third-party packages to make every sub-module work. However, it provides some requriements option to install more specified requirements to make some sub-modules work:

1. bio: some packages for biology(sci).
   install as pip install mbapy[bio]
2. full: full requirements to make almost every sub-module in mbapy work(except dl_torch).
   install as pip install mbapy[full]

If you find the latest release version has some problems, you can try install the up-to-date version on github or gitee:

pip install git+https://github.com/BHM-Bob/BA_PY.git

pip install git+https://gitee.com/BHM-Bob/BA_PY.git

docs

The documentation for mbapy can be found on read the docs, and it is the one that I will regularly update. The API document for mbapy is available on its wiki. However, please note that this wiki on GitHub has not been updated since 2023-07.

web sites

• open source at:
  1. github： https://github.com/BHM-Bob/BA_PY
  2. gitee： https://gitee.com/BHM-Bob/BA_PY
• docs at: read the docs: https://ba-py.rtfd.io

contain

mbapy python package

__version__

some version info

base

some utils for easier coding

file

image

imgae utils, including reading, saving and process a image into a feature tensor via pytorch.

video

video utils, including extract frames or unique frames from a video.

plot

pandas.dataFrame utils for plot and some simple plot based on plt

web

utils for web-crawler

request

get a web hyml page or a selenium browser warpper for easier usage.

parse

utils for parsing html

task

small task manager

stats

cluster

BAKmeans, KOptim, KBayesian from KMeans, and a func for many cluster

df

pandas.dataFrame utils for stats

reg

regression

test

some test func(using scipy and mostly give a support for mbapy-style data input)

dl-torch

pytorch utils for deeplearning

bb

basic blocks : tiny network structures

data

utils for dataset loading

loss

some loss function

m

model : deeplearning model constructed with basic blocks

utils

deeplearning training utils

optim

learning rate scheduler

paper

sci-paper utils, contains paper searching, downloading and parsing

paper_search

search papers via pubmed, baidu xueshu, wos

paper_download

download papers via scihub

paper_parse

parse paper from a pdf file into a dict of each sections

scripts

some useful scripts for command user
launch by python -m mbapy.scripts.XXX or mbapy-cli XXX.

examples

file

some file utils things

plot

1. stack bar plot with hue style

web/crawler

1. chaoxin ppt multi threads downloader (jpg->pdf)
2. wujin search http://www.basechem.org
3. chemSub search http://chemsub.online.fr
4. cnipa https://pss-system.cponline.cnipa.gov.cn/seniorSearch