High-performance tomographic reconstruction
Project description
Model-Based Iterative Reconstruction (MBIR) for tomographic reconstruction that is based on the JAX library. Full documentation is available at https://mbirjax.readthedocs.io .
Installing from PyPI
pip install mbirjax
Installing from Source
Clone the repository:
git clone git@github.com:cabouman/mbirjax.git
Install the conda environment and package
Option 1: Clean install using dev_scripts - We provide bash scripts that will do a clean install of MBIRJAX in a new conda environment using the commands:
cd dev_scripts source clean_install_all.sh
Option 2: Manual install - You can also manually install MBIRJAX from the main directory of the repository with the following commands:
conda create --name mbirjax python=3.10 conda activate mbirjax pip install -r requirements.txt pip install .
Running Demo(s)
Run any of the available demo scripts with something like the following:
python demo/<demo_file>.py
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