MCD to Zarr conversion and stitching
Project description
MCD STITCHER
Stitch rois from MCD files into OME-TIFFS.
Install
pip install mcd_stitcher
Requirements
- click
- numpy
- pandas
- python_dateutil
- xarray
- zarr
- scikit-image
Command line usage
*MCD to Zarr converter
imc2zarr <mcd_folder> <zarr_folder>
*Zarr dataset stitcher
zarr_stitch <zarr_folder>
*Composite MCD to Zarr to Stitch function
mcd_stitch <mcd_folder> <zarr_folder>
Arguments
- mcd_folder:
- The root folder of the IMC scan containing a single and/or multiple mcd files.
- zarr_folder:
- Storage location of converted MCD files in Zarr format and the starting point for stitching zarr files.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
mcd_stitcher-0.1.2.tar.gz
(15.3 kB
view hashes)
Built Distribution
Close
Hashes for mcd_stitcher-0.1.2-py3-none-any.whl
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | f757cf2f8ef450f1776962f002188d70319feb10ac3c2bb00752a72ae83caa60 |
|
| MD5 | 26d33603ccb5fcbcb00d482c4767f846 |
|
| BLAKE2b-256 | 3df29319b12e705d89916bcd9cabbc7acacccf3f32e68eaa64c2c93cb924845d |
