mdmparis-defense-finder 0.0.11

Defense Finder: allow for a systematic search of all known anti-phage systems.

Defense Finder

A cli utility enabling systematic search of all anti-phage systems in proteins using MacSyData and Mdm labs models.

Structure

cli

The cli logic, using click.

defense-finder

The defense finder logic, calling macsydata with the models.

updater

Updates the defense-finder models. Called during post-install and anytime later on.

Publishing

A Github action is setup to trigger a package release everytime a tagged commit is pushed.

Note that you don't need to publish defense-finder everytime the models change: only changes in this repository are relevant.

Here are the steps to follow in order to publish defense-finder:

• find the current version in the setup function of setup.py.
• get a new version number according to semantic versionning
• update the version un setup.py
• commit this change, and tag the commit with git tag -a v<your version number> -m '<your version number> <an optional message>'
• push your commits to master
• run git push origin v<your version> to sync the tags
• wait for the Github actions task to complete.
• all set! install the new version with pip install mdmparis-defense-finder==v<your-version>