Analyze FT-ICR-MS data
A comprehensive command-line based pipeline for the analysis of direct injection FT-ICR mass spectrometry data.
MetaboDirect can be installed directly from PyPi using:
pip install metabodirect
Additionally it can be installed from source by cloning its GitHub repository
git clone https://github.com/Coayala/MetaboDirect.git cd MetaboDirect python setup.py install
MetaboDirect requires Python (3.5 and above), R (4 and above) and Cytoscape (3.8 and above) with the following libraries/modules:
- pmartR (for normalization tests)
Information about the arguments can be obtaining using the option -h/--help
For more information please check the User Manual.
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