Set of tools used for metagenomics research project
Project description
metagentools
This repository includes the code developed as part of our metagenomics project.
The code is structured into general code and submodules to cover the various aspects of the project:
General utility code to be used across the project: - core: general
code - art: use ART-ILLUMINA read simulator package from a jupyter
notebook - wandb: use to open, retrieve, use WandB runs and artifacts
accross the project
Submodules: - cnn_virus - architecture - data - utils
This is work in progress and aspects are probably broken. We cannot provide support. Use at your own risk
Requirements: - python 3.10 is required for this package
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