Metabolic analysis of Logical models extracted from maps
Project description
MetaLo is a framework for the Metabolic analysis (FBA) of Logical models extracted automatically from detailed mechanistic maps. See this published article for more details.
Install
Metalo is provided as a Python3 package, you can install it from the Python package index with pip, conda or your Python package manager of choice:
$ python3 -m pip install metalo
Command-line usage
Just follow the instructions:
$ metalo --help usage: metalo [-h] [-v] [-D] [-i INIT] MAP METABOLISM Hybrid Framework. Copyright (C) 2023 Sahar.Aghakhani@inria.fr and Sylvain.Soliman@inria.fr GPLv3 positional arguments: MAP CellDesigner file containing the mechanistic map METABOLISM MitoCore style metabolic model optional arguments: -h, --help show this help message and exit -v, --version show program's version number and exit -D, --debug display some debug information -i INIT, --init INIT CSV file with forced initial values for the Logic model
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