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Metabolic analysis of Logical models extracted from maps

Project description

Code style: black Documentation Status PyPI - License PyPI PyPI - Python Version PyPI - Wheel dependency status for latest release

MetaLo is a framework for the Metabolic analysis (FBA) of Logical models extracted automatically from detailed mechanistic maps. See this published article for more details.


Metalo is provided as a Python3 package, you can install it from the Python package index with pip, conda or your Python package manager of choice:

$ python3 -m pip install metalo

If you want to use the GUI you will need to explicitly request that feature, but it depends on wxPython which sometimes fails to build on some platformes.

$ python3 -m pip install metalo[gui]

Command-line usage

Just follow the instructions:

$ metalo --help

 usage: metalo [-h] [-v] [-D] [-i INIT] MAP METABOLISM

 Hybrid Framework. Copyright (C) 2023 and GPLv3

 positional arguments:
   MAP                   CellDesigner file containing the mechanistic map
   METABOLISM            MitoCore style metabolic model

 optional arguments:
   -h, --help            show this help message and exit
   -v, --version         show program's version number and exit
   -D, --debug           display some debug information
   -i INIT, --init INIT  CSV file with forced initial values for the Logic model

Or run metalo with no arguments to launch the GUI, if it is installed.

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