Parse and clean up information from MetaNetX (https://metanetx.org).
Project description
Parse and process information from MetaNetX for MIRIAM compatibility using the Identifiers.org namespaces.
Install
It’s as simple as:
pip install metanetx-sdkUsage
The authoritative source on how to use the various commands is always accessible via the commands’ help.
mnx-sdk -hNormally you would start by loading the files from the MetaNetX FTP server
mnx-sdk pull ./dataand then transforming each data table.
mnx-sdk etl chem-prop ./data/chem_prop.tsv.gz ./data/transformed_chem_prop.tsv.gzYou can also directly use the functions from the metanetx_sdk.api module.
Copyright
Copyright © 2019-2020, Moritz E. Beber.
Free software distributed under the Apache Software License 2.0.
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