metanetx-sdk 0.3.2

Parse and prepare information from https://metanetx.org.

Parse and process information from MetaNetX for MIRIAM compatibility using the Identifiers.org namespaces.

Install

It’s as simple as:

pip install metanetx-sdk

Usage

The authoritative source on how to use the various commands is always accessible via the commands’ help.

metanetx -h

Normally you would start by loading the files from the MetaNetX FTP server

metanetx pull ./data

and then transforming each data table.

metanetx etl chem-prop ./data/chem_prop.tsv.gz ./data/transformed_chem_prop.tsv.gz

You can also directly use the functions from the metanetx_sdk.api module.

Copyright

• Copyright © 2019, Moritz E. Beber.

• Free software distributed under the Apache Software License 2.0.