Parse and prepare information from https://metanetx.org.
Project description
Parse and process information from MetaNetX for MIRIAM compatibility using the Identifiers.org namespaces.
Install
It’s as simple as:
pip install metanetx-sdk
Usage
The authoritative source on how to use the various commands is always accessible via the commands’ help.
metanetx -h
Normally you would start by loading the files from the MetaNetX FTP server
metanetx pull ./data
and then transforming each data table.
metanetx etl chem-prop ./data/chem_prop.tsv.gz ./data/transformed_chem_prop.tsv.gz
You can also directly use the functions from the metanetx_sdk.api module.
Copyright
Copyright © 2019, Moritz E. Beber.
Free software distributed under the Apache Software License 2.0.
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